Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.1e-58 228.8 115 100.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.3e-50 203.0 113 92.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.3e-36 155.6 111 78.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.0e-23 113.6 63 92.1
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.0e-23 113.6 63 90.5
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 2.5e-22 109.0 63 87.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 2.5e-22 109.0 63 87.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 1.6e-21 106.3 63 87.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 2.1e-21 105.9 63 82.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 2.7e-21 105.5 63 84.1
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 3.5e-21 105.1 63 85.7
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.5e-21 105.1 63 85.7
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 4.6e-21 104.8 63 87.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.8e-20 102.8 63 82.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.1e-19 100.1 63 77.8
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.5e-19 99.8 63 81.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.4e-19 97.4 63 74.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.4e-19 97.4 63 74.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 7.4e-19 97.4 63 74.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 1.6e-18 96.3 63 74.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.8e-18 95.5 64 71.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 4.8e-18 94.7 63 77.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 6.3e-18 94.4 63 73.0
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.4e-17 92.4 63 69.8
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.4e-17 92.4 63 69.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 3.1e-17 92.0 63 73.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.1e-17 91.7 61 72.1
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 4.1e-17 91.7 63 71.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.2e-16 90.1 63 69.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 1.2e-16 90.1 63 69.8
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 1.2e-16 90.1 63 73.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 2.0e-16 89.4 63 69.8
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.6e-16 89.0 63 74.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 3.4e-16 88.6 63 69.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 3.4e-16 88.6 63 69.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 3.4e-16 88.6 63 69.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 4.5e-16 88.2 61 72.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 69.8
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 4.5e-16 88.2 63 68.3
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 5.9e-16 87.8 75 56.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.9e-16 87.8 63 68.3
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 5.9e-16 87.8 63 66.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 7.7e-16 87.4 63 66.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 7.7e-16 87.4 61 70.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 1.0e-15 87.0 67 65.7
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.0e-15 87.0 63 73.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.0e-15 87.0 63 73.0
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.0e-15 87.0 63 68.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.0e-15 87.0 63 66.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.0e-15 87.0 67 65.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.3e-15 86.7 61 70.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.3e-15 86.7 63 66.7
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 1.3e-15 86.7 63 66.7
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-15 86.3 54 77.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.7e-15 86.3 63 66.7
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.7e-15 86.3 60 71.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 1.7e-15 86.3 63 68.3
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 2.2e-15 85.9 63 66.7
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 2.2e-15 85.9 63 66.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 2.2e-15 85.9 63 66.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 2.2e-15 85.9 63 66.7
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.9e-15 85.5 58 74.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 2.9e-15 85.5 63 68.3
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 2.9e-15 85.5 63 68.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.8e-15 85.1 61 67.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.8e-15 85.1 63 68.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 3.8e-15 85.1 63 66.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 3.8e-15 85.1 86 52.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 3.8e-15 85.1 63 66.7
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.0e-15 84.7 54 75.9
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 5.0e-15 84.7 63 66.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 5.0e-15 84.7 63 66.7
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 5.0e-15 84.7 63 66.7
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 6.5e-15 84.3 63 63.5
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 6.5e-15 84.3 61 70.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 6.5e-15 84.3 63 66.7
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 8.5e-15 84.0 63 66.7
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 1.1e-14 83.6 63 63.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.1e-14 83.6 63 65.1
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 1.9e-14 82.8 63 63.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.9e-14 82.8 63 63.5
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 2.5e-14 82.4 63 63.5
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.5e-14 82.4 63 63.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.5e-14 82.4 63 63.5
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.5e-14 82.4 64 67.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 3.2e-14 82.0 63 68.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 3.2e-14 82.0 63 66.7
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 3.2e-14 82.0 63 63.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 3.2e-14 82.0 63 66.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 4.2e-14 81.6 63 65.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 4.2e-14 81.6 63 63.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 4.2e-14 81.6 63 66.7
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 7.2e-14 80.9 63 65.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.2e-13 80.1 86 50.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.6e-13 79.7 63 63.5
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 3.6e-13 78.6 63 63.5
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 3.6e-13 78.6 63 63.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 4.6e-13 78.2 61 60.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.1e-13 77.8 64 62.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 6.1e-13 77.8 63 63.5
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 3.9e-12 75.1 61 62.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 4.3e-11 71.6 63 61.9
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.8e-10 68.9 61 59.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 4.8e-10 68.2 55 60.0
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.4e-09 65.9 58 56.9
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.0e-08 62.8 61 52.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.4e-08 62.0 61 52.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.8e-07 58.5 61 49.2


User provided reference genes

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