Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 7.4e-72 273.9 148 100.0
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 7.4e-64 247.3 148 91.9
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-57 226.5 139 89.9
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 1.1e-54 216.9 140 87.9
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 1.1e-54 216.9 140 87.9
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 1.1e-54 216.9 140 87.9
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.2e-53 213.4 143 85.3
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 3.8e-52 208.4 143 83.2
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 5.0e-52 208.0 141 85.1
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 1.9e-51 206.1 141 84.4
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 3.2e-51 205.3 109 100.0
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 3.2e-51 205.3 144 81.9
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 9.4e-51 203.8 142 83.8
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 1.2e-50 203.4 141 83.7
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 2.1e-50 202.6 144 82.6
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 1.4e-49 199.9 143 83.2
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-49 199.9 143 83.2
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 6.8e-49 197.6 142 84.5
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.5e-48 196.4 145 81.4
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 9.8e-48 193.7 145 80.7
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 5.2e-33 144.8 175 60.0
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 2.0e-32 142.9 139 66.2
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 7.0e-30 134.4 149 59.7
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.5e-27 126.7 138 52.9
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 2.8e-26 122.5 71 88.7
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-26 121.7 132 59.1
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 4.7e-26 121.7 140 56.4
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 8.0e-26 120.9 137 59.1
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-26 120.9 137 59.1
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-26 120.9 137 59.1
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-26 120.9 137 59.1
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.4e-25 120.2 136 56.6
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 1.4e-25 120.2 136 55.1
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 1.4e-25 120.2 142 52.8
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 2.3e-25 119.4 148 54.7
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 3.1e-25 119.0 131 55.0
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 3.1e-25 119.0 141 56.0
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 5.2e-25 118.2 130 55.4
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 5.2e-25 118.2 141 56.7
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 8.9e-25 117.5 132 53.8
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 8.9e-25 117.5 139 53.2
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.2e-24 117.1 148 51.4
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 1.5e-24 116.7 141 51.8
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 2.0e-24 116.3 139 51.8
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 2.0e-24 116.3 128 57.0
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 2.0e-24 116.3 147 50.3
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 2.0e-24 116.3 141 53.9
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.0e-24 116.3 131 55.7
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 2.6e-24 115.9 104 63.5
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 3.4e-24 115.5 131 55.0
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 3.4e-24 115.5 129 58.9
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 3.4e-24 115.5 141 52.5
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 5.8e-24 114.8 147 50.3
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 9.8e-24 114.0 151 48.3
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 9.8e-24 114.0 141 51.1
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 1.3e-23 113.6 93 65.6
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.7e-23 113.2 153 51.0
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 2.2e-23 112.8 147 51.0
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 2.2e-23 112.8 88 69.3
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 3.7e-23 112.1 141 51.8
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 4.9e-23 111.7 146 52.1
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.9e-23 111.7 134 49.3
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 6.4e-23 111.3 130 53.1
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 8.3e-23 110.9 161 48.4
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 8.3e-23 110.9 145 52.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 8.3e-23 110.9 132 53.0
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 8.3e-23 110.9 92 67.4
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 1.1e-22 110.5 134 51.5
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 1.1e-22 110.5 117 58.1
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 1.4e-22 110.2 132 53.8
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 1.9e-22 109.8 141 51.8
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.4e-22 109.4 129 51.2
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 4.1e-22 108.6 134 53.0
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 4.1e-22 108.6 106 59.4
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 5.4e-22 108.2 141 49.6
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 7.0e-22 107.8 130 50.0
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 7.0e-22 107.8 136 51.5
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 9.2e-22 107.5 146 53.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 9.2e-22 107.5 93 66.7
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 9.2e-22 107.5 145 51.7
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 1.2e-21 107.1 135 51.1
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.2e-21 107.1 146 48.6
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 1.6e-21 106.7 127 54.3
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.6e-21 106.7 122 50.8
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 1.6e-21 106.7 105 62.9
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 2.1e-21 106.3 111 58.6
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.1e-21 106.3 131 54.2
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.7e-21 105.9 86 66.3
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 2.7e-21 105.9 94 62.8
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.7e-21 105.9 143 48.3
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.7e-21 105.9 131 51.9
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 3.5e-21 105.5 133 50.4
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 3.5e-21 105.5 102 59.8
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 4.6e-21 105.1 123 52.8
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 4.6e-21 105.1 126 50.8
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 6.0e-21 104.8 92 62.0
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.0e-21 104.8 127 54.3
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 6.0e-21 104.8 136 48.5
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 6.0e-21 104.8 142 49.3
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 1.0e-20 104.0 124 53.2
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.3e-20 103.6 140 49.3
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.7e-20 103.2 129 52.7
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 2.3e-20 102.8 89 64.0
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 2.3e-20 102.8 131 48.9
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 2.3e-20 102.8 139 54.0
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 3.0e-20 102.4 90 62.2
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.0e-20 102.4 125 52.0
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 3.0e-20 102.4 88 62.5
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 6.6e-20 101.3 131 48.9
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 8.6e-20 100.9 101 59.4
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 8.6e-20 100.9 152 50.0
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 8.6e-20 100.9 142 47.9
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 8.6e-20 100.9 88 62.5
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 1.9e-19 99.8 141 49.6
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 1.9e-19 99.8 101 58.4
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.5e-19 99.4 139 48.2
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.5e-19 99.4 140 49.3
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 4.3e-19 98.6 139 46.8
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 4.3e-19 98.6 132 48.5
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 5.6e-19 98.2 176 42.6
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 5.6e-19 98.2 134 48.5
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 7.3e-19 97.8 142 47.9
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.2e-18 97.1 104 55.8
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.2e-18 97.1 96 60.4
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 1.2e-18 97.1 146 46.6
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 1.6e-18 96.7 94 59.6
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 2.1e-18 96.3 119 48.7
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 2.1e-18 96.3 88 61.4
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 2.8e-18 95.9 92 59.8
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 6.2e-18 94.7 119 47.9
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 6.2e-18 94.7 95 56.8
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 8.1e-18 94.4 137 48.2
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 1.1e-17 94.0 113 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 1.8e-17 93.2 61 80.3
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 1.8e-17 93.2 110 50.0
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.3e-17 92.8 108 54.6
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 3.1e-17 92.4 91 60.4
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 4.0e-17 92.0 81 59.3
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 5.2e-17 91.7 109 55.0
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 8.9e-17 90.9 128 46.1
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 2.6e-16 89.4 67 76.1
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 2.6e-16 89.4 113 51.3
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 4.4e-16 88.6 81 61.7
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 4.4e-16 88.6 118 50.8
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 4.4e-16 88.6 83 63.9
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 5.8e-16 88.2 85 57.6
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 9.9e-16 87.4 94 57.4
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 3.7e-15 85.5 106 50.9
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 3.7e-15 85.5 52 76.9
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 1.1e-14 84.0 97 47.4
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 1.9e-14 83.2 155 39.4
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 4.1e-14 82.0 75 60.0
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 5.4e-14 81.6 193 35.2
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 5.4e-14 81.6 47 85.1
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 1.2e-13 80.5 50 72.0
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.6e-13 80.1 98 52.0
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 2.7e-13 79.3 98 51.0
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 6.0e-13 78.2 79 55.7
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 1.3e-12 77.0 54 66.7
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 6.8e-09 64.7 41 78.0
C04p55220 Brassica napus HOM05D004404 ORTHO05D005070 7.6e-08 61.2 73 54.8
BolC4t27061H Brassica oleracea HOM05D000230 ORTHO05D005070 7.6e-08 61.2 73 54.8
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 2.2e-07 59.7 105 41.0
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.4e-06 57.0 134 35.8
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 2.4e-06 56.2 108 34.3
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.4e-06 56.2 91 40.7
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 3.2e-06 55.8 73 41.1
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.2e-06 55.8 101 40.6
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 4.2e-06 55.5 117 37.6
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 5.4e-06 55.1 72 45.8
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 5.4e-06 55.1 61 49.2
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.4e-06 55.1 97 39.2
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 7.1e-06 54.7 62 45.2
PRCOL_00005429 Prasinoderma coloniale HOM05D004404 ORTHO05D005070 7.1e-06 54.7 62 56.5
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 7.1e-06 54.7 60 43.3
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 9.2e-06 54.3 67 40.3
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 9.2e-06 54.3 113 32.7


User provided reference genes

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