Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.0e-140 503.4 258 100.0
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.5e-139 499.6 258 99.2
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.5e-139 499.6 258 99.2
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 5.2e-137 491.1 258 97.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 8.8e-137 490.3 258 97.7
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.5e-136 489.6 258 96.9
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 6.5e-132 474.2 258 94.2
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 3.2e-131 471.9 258 93.4
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.0e-129 466.8 258 93.0
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.7e-127 459.5 252 92.9
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.4e-126 456.4 257 89.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.1e-126 455.3 258 90.7
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.0e-124 450.3 253 92.1
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.5e-123 445.7 253 91.3
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 4.2e-123 444.9 253 91.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 8.8e-121 437.2 257 86.8
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 7.3e-107 391.0 263 76.0
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 5.1e-92 341.7 244 77.0
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.1e-84 315.1 240 66.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.8e-81 306.6 243 64.2
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.6e-80 302.8 238 64.3
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 9.9e-80 300.8 256 62.5
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 9.9e-80 300.8 256 60.5
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.3e-79 300.4 242 62.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.3e-79 300.4 259 63.3
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.7e-79 300.1 235 64.7
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 4.9e-79 298.5 244 62.7
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 6.4e-79 298.1 244 62.3
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 8.4e-79 297.7 240 64.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.1e-78 297.4 257 60.7
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.4e-78 297.0 243 61.3
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.2e-78 295.8 240 62.5
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.2e-78 295.8 240 62.5
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 5.4e-78 295.0 266 58.3
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 7.1e-78 294.7 259 62.2
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.2e-77 293.9 240 63.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.2e-77 293.9 236 64.8
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-77 293.5 260 58.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.6e-77 293.5 259 59.8
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-77 293.5 246 61.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.6e-77 292.0 245 60.0
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.3e-76 290.4 246 62.2
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.0e-76 289.3 236 62.3
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.1e-76 288.5 259 59.8
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.5e-75 286.2 263 58.2
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.5e-75 286.2 263 58.2
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.3e-75 285.8 245 58.0
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.3e-75 285.8 235 61.3
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 4.3e-75 285.4 259 60.6
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 7.3e-75 284.6 256 58.6
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 7.3e-75 284.6 259 59.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.1e-74 283.1 242 61.2
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.8e-74 282.7 256 58.2
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.6e-74 282.3 239 60.7
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 6.2e-74 281.6 236 59.7
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 8.1e-74 281.2 253 55.7
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.8e-73 280.0 239 59.8
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.4e-73 279.6 224 62.1
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 3.1e-73 279.3 242 59.5
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 5.3e-73 278.5 243 60.1
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 6.9e-73 278.1 235 60.0
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 6.9e-73 278.1 235 60.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 9.0e-73 277.7 238 61.8
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.2e-72 277.3 235 60.0
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.5e-72 276.9 238 62.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.6e-72 276.2 240 59.6
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 3.4e-72 275.8 259 57.9
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 4.4e-72 275.4 236 58.1
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 5.8e-72 275.0 246 57.7
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 5.8e-72 275.0 236 60.6
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 5.8e-72 275.0 236 61.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 7.6e-72 274.6 238 60.5
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.2e-71 273.1 244 57.8
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.9e-71 272.7 243 57.6
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.9e-70 270.0 246 59.3
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 5.4e-70 268.5 256 56.6
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.1e-69 266.5 238 59.2
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 3.5e-69 265.8 236 58.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.9e-68 262.3 231 58.9
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 5.1e-68 261.9 249 57.4
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.1e-68 261.9 251 55.4
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 7.3e-67 258.1 240 58.3
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 1.6e-66 256.9 246 56.9
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 4.8e-66 255.4 246 56.5
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 8.1e-66 254.6 260 55.0
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 8.1e-66 254.6 228 59.2
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.1e-65 254.2 236 54.7
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.1e-65 254.2 244 54.9
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.8e-65 253.4 232 59.1
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 3.1e-65 252.7 240 55.4
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 6.9e-65 251.5 244 54.1
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 9.0e-65 251.1 242 53.7
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.6e-64 249.6 261 53.6
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 4.5e-64 248.8 246 55.3
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 5.8e-64 248.4 242 56.6
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 7.6e-64 248.1 235 54.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 9.9e-64 247.7 208 62.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 2.2e-63 246.5 226 57.5
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 2.2e-63 246.5 253 51.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.9e-62 243.4 264 51.1
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 2.4e-62 243.0 224 55.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.2e-61 240.7 244 55.7
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.7e-61 239.6 261 52.1
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 6.0e-61 238.4 250 51.2
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.8e-60 236.9 267 49.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.7e-60 234.6 203 57.6
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 4.3e-59 232.3 269 49.1
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.1e-58 229.9 238 51.7
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.1e-58 228.0 216 59.7
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 3.1e-57 226.1 230 58.7
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 2.6e-56 223.0 241 51.0
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 8.4e-55 218.0 245 50.6
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 4.6e-53 212.2 254 48.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 7.9e-53 211.5 239 50.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.8e-52 210.3 181 59.7
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.1e-51 207.6 256 47.3
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.9e-51 206.8 211 54.5
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 5.0e-47 192.2 223 49.3
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 7.9e-45 184.9 142 59.9
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.9e-44 182.6 239 43.5
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 5.0e-39 165.6 224 41.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.3e-34 151.0 94 86.2
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.3e-34 151.0 94 86.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.1e-33 146.4 122 54.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.9e-30 137.1 209 38.8
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 4.7e-29 132.5 165 45.5
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 4.7e-29 132.5 145 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 2.6e-27 126.7 238 36.6
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 3.3e-27 126.3 217 36.9
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.4e-27 125.9 182 45.1
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 4.4e-27 125.9 133 51.1
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.7e-26 124.0 233 36.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.2e-26 123.6 225 35.6
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.8e-26 123.2 182 44.5
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.7e-26 122.9 229 33.6
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.4e-25 120.9 139 44.6
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.2e-24 117.9 224 35.7
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.9e-22 110.5 154 46.8
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.7e-15 87.4 69 62.3
BcaC06g30702 Brassica carinata HOM05D005143 ORTHO05D006404 2.9e-15 86.7 51 84.3
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.1e-13 79.0 70 65.7
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 6.5e-07 58.9 49 65.3
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.5e-06 57.8 91 36.3
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 1.9e-06 57.4 49 67.3
SMO141G0117 Selaginella moellendorffii HOM05D001019 ORTHO05D000859 5.5e-06 55.8 174 30.5


User provided reference genes

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