Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56920 Brassica napus HOM05D003555 ORTHO05D040056 2.7e-46 188.3 97 100.0
BcaC03g17683 Brassica carinata HOM05D003555 ORTHO05D040056 1.3e-21 106.3 55 100.0
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 5.3e-18 94.4 70 75.7
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 1.5e-17 92.8 70 74.3
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 2.0e-17 92.4 70 74.3
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 2.0e-17 92.4 70 74.3
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 2.0e-17 92.4 70 74.3
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 2.0e-17 92.4 70 74.3
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 2.0e-17 92.4 70 74.3
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 3.8e-16 88.2 70 67.1
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 6.5e-16 87.4 70 67.1
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 6.5e-16 87.4 70 65.7
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 8.4e-16 87.0 70 68.6
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 1.1e-15 86.7 73 65.8
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 1.1e-15 86.7 73 65.8
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 1.1e-15 86.7 73 64.4
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 1.1e-15 86.7 70 65.7
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 1.1e-15 86.7 73 65.8
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 1.1e-15 86.7 70 67.1
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 1.4e-15 86.3 70 65.7
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 1.4e-15 86.3 70 65.7
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.4e-15 86.3 70 67.1
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 1.4e-15 86.3 70 68.6
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 1.4e-15 86.3 70 65.7
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 1.9e-15 85.9 70 67.1
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 1.9e-15 85.9 70 67.1
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 2.5e-15 85.5 73 63.0
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 2.5e-15 85.5 70 64.3
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 2.5e-15 85.5 70 65.7
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 3.2e-15 85.1 70 65.7
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 3.2e-15 85.1 70 65.7
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 3.2e-15 85.1 70 65.7
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 3.2e-15 85.1 73 64.4
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 65.7
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 65.7
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 65.7
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 65.7
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 65.7
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 4.2e-15 84.7 70 64.3
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 5.5e-15 84.3 73 64.4
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 5.5e-15 84.3 70 65.7
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 5.5e-15 84.3 70 65.7
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 7.1e-15 84.0 70 64.3
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 7.1e-15 84.0 70 65.7
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 7.1e-15 84.0 70 62.9
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 7.1e-15 84.0 73 63.0
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 9.3e-15 83.6 70 67.1
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 9.3e-15 83.6 70 65.7
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 9.3e-15 83.6 70 64.3
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 9.3e-15 83.6 70 64.3
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 9.3e-15 83.6 70 62.9
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 1.2e-14 83.2 70 61.4
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 1.2e-14 83.2 70 65.7
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 1.2e-14 83.2 70 64.3
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 1.2e-14 83.2 70 64.3
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.6e-14 82.8 70 62.9
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 1.6e-14 82.8 70 62.9
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 1.6e-14 82.8 70 65.7
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 2.1e-14 82.4 70 62.9
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 2.1e-14 82.4 70 64.3
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 2.1e-14 82.4 70 65.7
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.7e-14 82.0 70 62.9
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.7e-14 82.0 70 62.9
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 2.7e-14 82.0 70 62.9
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 2.7e-14 82.0 70 64.3
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 2.7e-14 82.0 70 62.9
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 61.4
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 61.4
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 62.9
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 62.9
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 62.9
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 62.9
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 62.9
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 3.5e-14 81.6 70 61.4
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 61.4
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 60.0
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 62.9
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 62.9
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 61.4
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 62.9
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 61.4
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 62.9
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 4.6e-14 81.3 70 64.3
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 6.0e-14 80.9 70 61.4
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 6.0e-14 80.9 70 61.4
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 6.0e-14 80.9 70 61.4
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 7.9e-14 80.5 70 62.9
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 7.9e-14 80.5 70 61.4
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 7.9e-14 80.5 70 60.0
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 7.9e-14 80.5 73 60.3
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 7.9e-14 80.5 70 62.9
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.0e-13 80.1 70 60.0
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.0e-13 80.1 66 65.2
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 1.0e-13 80.1 70 62.9
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 1.3e-13 79.7 70 61.4
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 1.3e-13 79.7 66 62.1
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 1.3e-13 79.7 73 57.5
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 1.3e-13 79.7 70 61.4
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 1.8e-13 79.3 70 60.0
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 1.8e-13 79.3 70 61.4
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 2.3e-13 79.0 70 60.0
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 2.3e-13 79.0 71 59.2
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 2.3e-13 79.0 70 64.3
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 3.0e-13 78.6 66 62.1
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 3.0e-13 78.6 70 58.6
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 3.0e-13 78.6 73 56.2
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 3.9e-13 78.2 68 61.8
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 3.9e-13 78.2 70 60.0
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 3.9e-13 78.2 70 61.4
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 5.1e-13 77.8 70 62.9
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 5.1e-13 77.8 70 58.6
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 5.1e-13 77.8 66 63.6
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 5.1e-13 77.8 70 58.6
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 64.3
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 64.3
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 60.0
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 60.0
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 62.9
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 6.7e-13 77.4 70 61.4
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 1.1e-12 76.6 70 60.0
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 1.1e-12 76.6 70 58.6
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 1.1e-12 76.6 70 61.4
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 60.0
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 57.1
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 57.1
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 61.4
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 61.4
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 1.5e-12 76.3 70 61.4
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 1.9e-12 75.9 70 60.0
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 1.9e-12 75.9 70 58.6
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 2.5e-12 75.5 66 63.6
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 3.3e-12 75.1 66 59.1
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 3.3e-12 75.1 70 57.1
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 3.3e-12 75.1 70 57.1
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 3.3e-12 75.1 70 57.1
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 7.4e-12 73.9 70 58.6
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 2.2e-11 72.4 70 57.1
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 2.2e-11 72.4 70 57.1
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 2.8e-11 72.0 66 57.6
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 2.8e-11 72.0 73 52.1
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 6.3e-11 70.9 69 55.1
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 8.2e-11 70.5 66 60.6
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 4.1e-10 68.2 67 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 5.3e-10 67.8 74 50.0
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 1.2e-09 66.6 66 56.1
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 2.6e-09 65.5 68 52.9
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 9.3e-07 57.0 74 52.7


User provided reference genes

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