Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-287 992.3 501 100.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-287 992.3 501 100.0
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.6e-280 968.8 502 97.8
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.6e-275 952.2 503 96.2
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 6.7e-266 920.2 511 93.5
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.5e-246 855.9 518 86.3
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.6e-238 828.6 511 84.0
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 5.7e-233 810.8 514 82.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.1e-231 806.6 516 82.2
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 5.0e-229 797.7 516 82.2
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 1.9e-228 795.8 516 82.0
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.9e-228 795.8 516 82.0
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.6e-227 792.7 526 80.2
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 2.7e-222 775.4 514 79.4
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.5e-220 768.8 510 79.0
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 4.2e-220 768.1 505 78.6
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.0e-218 763.5 507 79.1
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 6.6e-205 717.6 531 72.1
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.2e-186 654.8 521 67.6
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.1e-124 451.1 514 50.8
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.3e-123 447.6 446 53.6
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.8e-123 446.4 448 53.6
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 8.2e-123 444.9 518 49.0
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 8.2e-123 444.9 446 54.0
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.8e-122 443.7 445 53.5
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 5.3e-122 442.2 518 49.4
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 9.1e-122 441.4 516 49.8
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 4.5e-121 439.1 519 49.3
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.3e-120 437.6 443 54.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.2e-120 436.8 521 47.8
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.2e-120 436.8 445 52.4
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.9e-120 436.4 443 54.0
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 5.0e-120 435.6 517 48.5
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 6.5e-120 435.3 454 51.5
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.5e-119 433.3 445 51.9
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.5e-119 433.3 515 49.5
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.2e-119 432.6 443 54.0
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.0e-117 427.9 513 48.9
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 4.0e-117 426.0 515 48.2
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.3e-115 421.0 456 50.7
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.2e-115 420.2 514 46.5
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.3e-115 418.7 518 46.5
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 6.3e-115 418.7 521 46.1
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.0e-112 409.1 496 48.2
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 8.5e-112 408.3 568 44.2
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 2.5e-111 406.8 452 49.6
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 2.5e-111 406.8 451 48.8
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 4.2e-111 406.0 455 50.5
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 9.4e-111 404.8 510 46.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 6.1e-110 402.1 460 48.5
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.8e-109 400.6 450 48.7
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.2e-109 399.1 451 49.4
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 6.8e-109 398.7 452 49.3
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 8.8e-109 398.3 451 50.3
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 5.7e-108 395.6 524 44.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 9.8e-108 394.8 517 47.6
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.8e-108 394.8 451 48.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-107 394.4 452 50.0
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.3e-107 394.4 449 50.3
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.2e-107 393.7 519 46.2
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.7e-107 392.9 442 48.9
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 2.4e-106 390.2 443 49.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 4.1e-106 389.4 474 47.0
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 7.0e-106 388.7 517 44.5
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.0e-105 387.1 518 46.1
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 3.5e-105 386.3 515 46.6
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 4.5e-105 386.0 521 44.1
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 4.2e-103 379.4 473 44.8
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 4.2e-103 379.4 523 43.8
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 5.5e-103 379.0 456 47.8
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.2e-102 377.9 448 48.0
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.8e-101 374.0 497 45.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.3e-101 373.6 447 46.3
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 3.0e-101 373.2 443 48.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.6e-100 370.2 510 43.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 6.3e-99 365.5 446 45.7
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 9.2e-98 361.7 532 41.4
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 4.5e-97 359.4 444 45.9
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 4.5e-97 359.4 446 46.2
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 7.8e-97 358.6 446 45.7
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.3e-96 357.1 402 50.0
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.9e-96 356.3 445 45.8
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 2.5e-95 353.6 444 45.9
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.3e-95 353.2 524 41.2
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 4.3e-95 352.8 537 42.3
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.2e-93 345.9 355 51.3
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 2.6e-92 343.6 519 43.2
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 7.5e-92 342.0 448 45.3
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.3e-91 341.3 529 39.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.7e-91 340.9 447 45.6
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.2e-89 334.7 445 44.7
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 6.0e-89 332.4 373 48.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 2.2e-83 313.9 367 45.8
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 2.4e-82 310.5 446 42.4
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.4e-77 294.7 466 39.5
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 3.1e-77 293.5 406 43.8
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.1e-74 283.1 309 51.5
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.6e-73 279.6 449 39.0
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.0e-72 276.9 456 36.6
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.4e-69 267.3 211 67.8
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 6.8e-69 265.8 375 42.1
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 2.9e-59 233.8 442 36.9
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 5.3e-53 213.0 191 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 4.2e-50 203.4 461 33.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.3e-48 198.4 523 28.7
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.8e-46 190.7 316 39.6
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 3.7e-46 190.3 468 30.8
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.4e-45 188.3 287 40.8
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.4e-44 183.7 448 29.9
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 4.9e-43 179.9 135 74.1
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 4.9e-43 179.9 143 65.7
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-41 175.3 305 37.4
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.7e-41 174.1 213 45.1
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.0e-40 172.2 274 37.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.6e-33 148.3 139 54.0
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.7e-31 139.8 251 39.0
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.2e-30 136.0 126 59.5
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.3e-27 128.6 111 61.3
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.4e-26 125.2 232 34.5
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.4e-21 108.6 269 30.5
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.5e-19 99.4 131 39.7
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 3.3e-15 87.4 194 30.4
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 4.8e-14 83.6 140 35.0
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.1e-07 62.4 73 46.6
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.2e-06 58.2 99 30.3
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 2.8e-06 57.8 67 41.8


User provided reference genes

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