Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56710 Brassica napus HOM05D004459 ORTHO05D005178 1.2e-58 229.6 110 100.0
BolC2t11738H Brassica oleracea HOM05D004459 ORTHO05D005178 8.0e-47 190.3 109 86.2
Sp2g19010 Schrenkiella parvula HOM05D004459 ORTHO05D005178 6.2e-31 137.5 95 76.8
BcaB07g30037 Brassica carinata HOM05D004459 ORTHO05D005178 2.3e-30 135.6 95 76.8
Carub.0005s0820 Capsella rubella HOM05D004459 ORTHO05D005178 3.1e-30 135.2 95 75.8
AL8G21650 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 4.0e-30 134.8 95 74.7
CARHR183330 Cardamine hirsuta HOM05D004459 ORTHO05D005178 4.0e-30 134.8 95 74.7
Carub.0008s0830 Capsella rubella HOM05D004459 ORTHO05D005178 6.8e-30 134.0 95 74.7
AT5G48630 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 8.9e-30 133.7 95 73.7
BcaC03g17667 Brassica carinata HOM05D004459 ORTHO05D005178 9.9e-29 130.2 95 70.5
A02p37650 Brassica napus HOM05D004459 ORTHO05D005178 9.9e-29 130.2 95 70.5
BraA02t08747Z Brassica rapa HOM05D004459 ORTHO05D005178 9.9e-29 130.2 95 70.5
C02p56740 Brassica napus HOM05D004459 ORTHO05D005178 2.2e-28 129.0 95 69.5
BolC2t11742H Brassica oleracea HOM05D004459 ORTHO05D005178 3.7e-28 128.3 95 69.5
THA.LOC104822487 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 4.9e-28 127.9 95 66.3
AL8G21630 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 1.2e-26 123.2 95 70.5
COL.COLO4_16102 Corchorus olitorius HOM05D004459 ORTHO05D005178 1.0e-25 120.2 95 65.3
Manes.13G050900 Manihot esculenta HOM05D004459 ORTHO05D005178 1.0e-25 120.2 95 65.3
Duzib133G1079 Durio zibethinus HOM05D004459 ORTHO05D005178 2.3e-25 119.0 95 64.2
Gohir.D07G096900 Gossypium hirsutum HOM05D004459 ORTHO05D005178 2.3e-25 119.0 95 64.2
Gorai.001G104300 Gossypium raimondii HOM05D004459 ORTHO05D005178 5.1e-25 117.9 97 61.9
Gohir.A07G092400 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.6e-25 117.1 95 63.2
Gohir.A11G140100 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.6e-25 117.1 95 64.2
Gohir.D11G146500 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.6e-25 117.1 95 64.2
Gorai.007G156900 Gossypium raimondii HOM05D004459 ORTHO05D005178 8.6e-25 117.1 95 64.2
Potri.014G194900 Populus trichocarpa HOM05D004459 ORTHO05D005178 8.6e-25 117.1 95 62.1
THA.LOC104818977 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 1.1e-24 116.7 134 50.7
Sabra02G0187900 Salix brachista HOM05D004459 ORTHO05D005178 2.5e-24 115.5 94 63.8
Thecc.01G217400 Theobroma cacao HOM05D004459 ORTHO05D005178 4.3e-24 114.8 95 62.1
Ciclev10021820m.g Citrus clementina HOM05D004459 ORTHO05D005178 5.6e-24 114.4 95 62.1
Potri.002G246800 Populus trichocarpa HOM05D004459 ORTHO05D005178 5.6e-24 114.4 95 63.2
Atru.chr6.1442 Acer truncatum HOM05D004459 ORTHO05D005178 7.3e-24 114.0 95 62.1
arahy.Tifrunner.gnm1.ann1.J5WB5S Arachis hypogaea HOM05D004459 ORTHO05D005178 1.2e-23 113.2 96 61.5
TWI36G0336 Tripterygium wilfordii HOM05D004459 ORTHO05D005178 1.6e-23 112.8 95 61.1
Lj1g0001756 Lotus japonicus HOM05D004459 ORTHO05D005178 2.1e-23 112.5 95 62.1
Actinidia09461 Actinidia chinensis HOM05D004459 ORTHO05D005178 2.8e-23 112.1 95 62.1
Solyc06g083260.3 Solanum lycopersicum HOM05D004459 ORTHO05D005178 3.6e-23 111.7 97 58.8
Sopen06g034640 Solanum pennellii HOM05D004459 ORTHO05D005178 3.6e-23 111.7 97 58.8
PGSC0003DMG401020104 Solanum tuberosum HOM05D004459 ORTHO05D005178 3.6e-23 111.7 97 58.8
Actinidia23765 Actinidia chinensis HOM05D004459 ORTHO05D005178 4.7e-23 111.3 96 60.4
Lalb_Chr01g0022191 Lupinus albus HOM05D004459 ORTHO05D005178 8.1e-23 110.5 95 61.1
Lalb_Chr19g0125891 Lupinus albus HOM05D004459 ORTHO05D005178 1.1e-22 110.2 95 61.1
MELO3C023189.2 Cucumis melo HOM05D004459 ORTHO05D005178 1.4e-22 109.8 95 61.1
CsaV3_2G019680 Cucumis sativus L. HOM05D004459 ORTHO05D005178 1.4e-22 109.8 95 61.1
Psat3g149520 Pisum sativum HOM05D004459 ORTHO05D005178 1.4e-22 109.8 95 60.0
Thhalv10004814m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 1.8e-22 109.4 95 57.9
Nitab4.5_0002671g0020 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.8e-22 109.4 97 57.7
Nitab4.5_0003020g0110 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.8e-22 109.4 97 57.7
PGR083G1823 Punica granatum HOM05D004459 ORTHO05D005178 2.4e-22 109.0 95 60.0
Nitab4.5_0000403g0040 Nicotiana tabacum HOM05D004459 ORTHO05D005178 3.1e-22 108.6 97 57.7
Nitab4.5_0005866g0010 Nicotiana tabacum HOM05D004459 ORTHO05D005178 3.1e-22 108.6 97 57.7
CSS0012359 Camellia sinensis var. sinensis HOM05D004459 ORTHO05D005178 4.0e-22 108.2 97 56.7
CANSAT01G2987 Cannabis sativa HOM05D004459 ORTHO05D005178 4.0e-22 108.2 95 58.9
Eucgr.H00759 Eucalyptus grandis HOM05D004459 ORTHO05D005178 4.0e-22 108.2 95 58.9
Glyma.08G347600 Glycine max HOM05D004459 ORTHO05D005178 4.0e-22 108.2 95 60.0
Glyma.18G159000 Glycine max HOM05D004459 ORTHO05D005178 4.0e-22 108.2 95 60.0
Ah.08g214750 Amaranthus hybridus HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 61.1
AT5G48640 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
BcaC03g17668 Brassica carinata HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
C02p56750 Brassica napus HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
BolC2t11743H Brassica oleracea HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
BraA02t08748Z Brassica rapa HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
Sp2g19020 Schrenkiella parvula HOM05D004459 ORTHO05D005178 5.2e-22 107.8 95 57.9
BcaB07g30038 Brassica carinata HOM05D004459 ORTHO05D005178 6.8e-22 107.5 95 57.9
CARHR183320 Cardamine hirsuta HOM05D004459 ORTHO05D005178 6.8e-22 107.5 95 56.8
Hma1.2p1_0149F.1_g066510 Hydrangea macrophylla HOM05D004459 ORTHO05D005178 6.8e-22 107.5 98 56.1
AL8G21660 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 8.9e-22 107.1 95 56.8
MSTRG.17987 Avicennia marina HOM05D004459 ORTHO05D005178 8.9e-22 107.1 97 56.7
Phvul.007G143100 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 8.9e-22 107.1 95 58.9
Phvul.008G132450 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 8.9e-22 107.1 95 58.9
AUR62001146 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.2e-21 106.7 95 61.1
AUR62016530 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.2e-21 106.7 95 61.1
Cfa021481 Carpinus fangiana HOM05D004459 ORTHO05D005178 1.5e-21 106.3 95 57.9
FAN24G3552 Fragaria x ananassa HOM05D004459 ORTHO05D005178 1.5e-21 106.3 97 54.6
MD10G1157700 Malus domestica HOM05D004459 ORTHO05D005178 1.5e-21 106.3 95 57.9
MD10G1158300 Malus domestica HOM05D004459 ORTHO05D005178 1.5e-21 106.3 95 57.9
Medtr7g055650 Medicago truncatula HOM05D004459 ORTHO05D005178 1.5e-21 106.3 94 59.6
Prupe.8G196700 Prunus persica HOM05D004459 ORTHO05D005178 1.5e-21 106.3 95 58.9
RcHm_v2.0_Chr6g0283781 Rosa chinensis HOM05D004459 ORTHO05D005178 1.5e-21 106.3 95 56.8
Peaxi162Scf00487g00620 Petunia axillaris HOM05D004459 ORTHO05D005178 2.0e-21 105.9 97 56.7
Sed0021622 Sechium edule HOM05D004459 ORTHO05D005178 2.0e-21 105.9 95 56.8
CiPaw.13G050600 Carya illinoinensis HOM05D004459 ORTHO05D005178 2.6e-21 105.5 95 58.9
QL02p059745 Quercus lobata HOM05D004459 ORTHO05D005178 2.6e-21 105.5 96 57.3
SalBow6G5468 Salvia bowleyana HOM05D004459 ORTHO05D005178 2.6e-21 105.5 97 55.7
unitig_0.g407 Utricularia gibba HOM05D004459 ORTHO05D005178 2.6e-21 105.5 97 56.7
Aa31LG6G9700 Aethionema arabicum HOM05D004459 ORTHO05D005178 3.4e-21 105.1 99 52.5
QL02p059784 Quercus lobata HOM05D004459 ORTHO05D005178 3.4e-21 105.1 95 58.9
TPR.G6416 Trifolium pratense HOM05D004459 ORTHO05D005178 3.4e-21 105.1 95 57.9
CAN.G874.13 Capsicum annuum HOM05D004459 ORTHO05D005178 4.4e-21 104.8 97 54.6
HanXRQChr01g0015361 Helianthus annuus HOM05D004459 ORTHO05D005178 4.4e-21 104.8 97 54.6
A06p39040 Brassica napus HOM05D004459 ORTHO05D005178 5.8e-21 104.4 95 55.8
BraA06t26817Z Brassica rapa HOM05D004459 ORTHO05D005178 5.8e-21 104.4 95 55.8
FAN27G2700 Fragaria x ananassa HOM05D004459 ORTHO05D005178 5.8e-21 104.4 95 54.7
EL10Ac5g11649 Beta vulgaris HOM05D004459 ORTHO05D005178 7.6e-21 104.0 95 58.9
EL10Ac7g17932 Beta vulgaris HOM05D004459 ORTHO05D005178 7.6e-21 104.0 95 58.9
BcaC06g30774 Brassica carinata HOM05D004459 ORTHO05D005178 9.9e-21 103.6 95 54.7
C07p39300 Brassica napus HOM05D004459 ORTHO05D005178 9.9e-21 103.6 95 54.7
BolC7t44450H Brassica oleracea HOM05D004459 ORTHO05D005178 9.9e-21 103.6 95 54.7
DCAR_000515 Daucus carota HOM05D004459 ORTHO05D005178 9.9e-21 103.6 96 55.2
Sc05g0001910 Simmondsia chinensis HOM05D004459 ORTHO05D005178 9.9e-21 103.6 96 60.4
MSTRG.20974 Avicennia marina HOM05D004459 ORTHO05D005178 1.3e-20 103.2 97 55.7
Os09g0504400 Oryza sativa ssp. japonica HOM05D004459 ORTHO05D005178 1.3e-20 103.2 95 57.9
GSVIVG01006388001 Vitis vinifera HOM05D004459 ORTHO05D005178 1.3e-20 103.2 97 55.7
Cc01_g16560 Coffea canephora HOM05D004459 ORTHO05D005178 1.7e-20 102.8 97 54.6
Mapoly0005s0080 Marchantia polymorpha HOM05D004459 ORTHO05D005178 1.7e-20 102.8 97 49.5
SGA_v2.0_scaffold104G30089 Striga asiatica HOM05D004459 ORTHO05D005178 1.7e-20 102.8 97 55.7
Nn3g20066 Nelumbo nucifera HOM05D004459 ORTHO05D005178 2.2e-20 102.4 97 54.6
ATR0561G002 Amborella trichopoda HOM05D004459 ORTHO05D005178 2.9e-20 102.1 95 51.6
Aqoxy2G03940 Aquilegia oxysepala HOM05D004459 ORTHO05D005178 2.9e-20 102.1 97 54.6
Carub.0005s0821 Capsella rubella HOM05D004459 ORTHO05D005178 2.9e-20 102.1 95 53.7
A02p37660 Brassica napus HOM05D004459 ORTHO05D005178 3.8e-20 101.7 95 56.8
Lsat_1_v5_gn_5_177641 Lactuca sativa HOM05D004459 ORTHO05D005178 3.8e-20 101.7 97 52.6
HPP92_001407 Vanilla planifolia HOM05D004459 ORTHO05D005178 4.9e-20 101.3 97 54.6
Zm00001eb317580 Zea mays HOM05D004459 ORTHO05D005178 4.9e-20 101.3 97 55.7
Carub.0008s0831 Capsella rubella HOM05D004459 ORTHO05D005178 6.4e-20 100.9 95 52.6
ECA248G3763 Erigeron canadensis HOM05D004459 ORTHO05D005178 6.4e-20 100.9 96 55.2
MBI07_g27657_MAGBIO Magnolia biondii HOM05D004459 ORTHO05D005178 6.4e-20 100.9 97 54.6
THA.LOC104822488 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 6.4e-20 100.9 95 52.6
CiPaw.14G040200 Carya illinoinensis HOM05D004459 ORTHO05D005178 8.4e-20 100.5 99 54.5
ECA236G4121 Erigeron canadensis HOM05D004459 ORTHO05D005178 1.4e-19 99.8 97 52.6
PSO017G6853 Papaver somniferum HOM05D004459 ORTHO05D005178 1.4e-19 99.8 114 49.1
PSO063G5689 Papaver somniferum HOM05D004459 ORTHO05D005178 1.4e-19 99.8 114 49.1
HanXRQChr04g0108291 Helianthus annuus HOM05D004459 ORTHO05D005178 1.9e-19 99.4 97 52.6
vmacro14724 Vaccinium macrocarpon HOM05D004459 ORTHO05D005178 2.4e-19 99.0 97 52.6
TAR365G0904 Trochodendron aralioides HOM05D004459 ORTHO05D005178 1.6e-18 96.3 96 53.1
Pp3c23_12870 Physcomitrium patens HOM05D004459 ORTHO05D005178 2.7e-18 95.5 95 48.4
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05D004459 ORTHO05D005178 6.0e-18 94.4 97 49.5
CAN.G1010.1 Capsicum annuum HOM05D004459 ORTHO05D005178 1.0e-17 93.6 98 52.0
Pp3c24_1910 Physcomitrium patens HOM05D004459 ORTHO05D005178 2.3e-17 92.4 95 47.4
Haze_03347 Corylus avellana HOM05D004459 ORTHO05D005178 3.9e-17 91.7 95 54.7
SMO147G0024 Selaginella moellendorffii HOM05D004459 ORTHO05D005178 3.9e-17 91.7 97 46.4
Duzib138G0860 Durio zibethinus HOM05D004459 ORTHO05D005178 6.6e-17 90.9 95 50.5
unitig_60.g25580 Utricularia gibba HOM05D000036 ORTHO05D001038 8.7e-17 90.5 97 50.5
Lsat_1_v5_gn_3_115720 Lactuca sativa HOM05D004459 ORTHO05D005178 1.1e-16 90.1 95 53.7
FAN15G2342 Fragaria x ananassa HOM05D004459 ORTHO05D005178 2.5e-16 89.0 95 50.5
BolC2t11741H Brassica oleracea HOM05D004459 ORTHO05D005178 8.1e-15 84.0 71 67.6
ClCG02G000030 Citrullus lanatus HOM05D004459 ORTHO05D005178 1.5e-13 79.7 155 35.5
BolC2t11736H Brassica oleracea HOM05D004459 ORTHO05D005178 3.8e-12 75.1 36 97.2
Thhalv10004803m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 2.4e-11 72.4 39 87.2
MD05G1169500 Malus domestica HOM05D004459 ORTHO05D005178 3.0e-09 65.5 39 76.9
arahy.Tifrunner.gnm1.ann1.WFM4SD Arachis hypogaea HOM05D004459 ORTHO05D005178 1.5e-08 63.2 39 71.8
Eucgr.L03048 Eucalyptus grandis HOM05D004459 ORTHO05D005178 1.9e-08 62.8 39 71.8
Hund05584 Selenicereus undatus HOM05D004459 ORTHO05D005178 3.3e-08 62.0 40 75.0
Dinv14524 Davidia involucrata HOM05D004459 ORTHO05D005178 9.6e-08 60.5 35 74.3
Migut.D02511 Erythranthe guttata HOM05D004459 ORTHO05D005178 9.6e-08 60.5 72 45.8
SHI14518 Sapria himalayana HOM05D004459 ORTHO05D005178 9.6e-08 60.5 176 27.8
VMungo1383G0758 Vigna mungo HOM05D004459 ORTHO05D005178 9.6e-08 60.5 39 69.2
FvH4_2g18390 Fragaria vesca HOM05D004459 ORTHO05D005178 1.6e-07 59.7 36 69.4
Lj2A1122G39 Lonicera japonica HOM05D004459 ORTHO05D005178 1.6e-07 59.7 77 42.9
CDE11G0844 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 6.2e-07 57.8 39 71.8


User provided reference genes

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