Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 8.4e-31 136.7 88 100.0
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 2.5e-30 135.2 88 98.9
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 2.5e-30 135.2 88 98.9
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 5.5e-30 134.0 88 87.5
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 5.5e-30 134.0 88 87.5
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-28 128.6 88 94.3
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 3.0e-28 128.3 88 87.5
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 3.0e-28 128.3 88 83.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 3.0e-28 128.3 88 83.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 3.0e-28 128.3 88 83.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 3.0e-28 128.3 88 83.0
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 3.9e-28 127.9 88 92.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 3.9e-28 127.9 88 92.0
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.9e-27 125.6 88 90.9
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 2.5e-27 125.2 88 81.8
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 2.5e-27 125.2 88 81.8
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 4.8e-26 120.9 88 79.5
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 9.0e-25 116.7 88 76.1
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.2e-24 116.3 88 76.1
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.0e-24 115.5 88 88.6
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 7.6e-24 113.6 88 75.0
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 6.3e-18 94.0 85 64.7
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 2.4e-17 92.0 88 63.6
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.5e-16 89.4 60 80.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 5.9e-16 87.4 57 78.9
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 6.3e-10 67.4 52 69.2
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.3e-09 64.3 52 65.4
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.3e-09 64.3 52 65.4
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 6.9e-09 63.9 53 64.2
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 63.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 67.3
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 65.4
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 63.5
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.2e-08 63.2 53 60.4
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.5e-08 62.8 48 70.8
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 65.4
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.0e-08 62.4 51 64.7
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 4.5e-08 61.2 52 63.5
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 4.5e-08 61.2 50 66.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 5.9e-08 60.8 52 61.5
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 59.6
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.0e-07 60.1 52 61.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 57.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.7e-07 59.3 50 56.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 6.5e-07 57.4 52 59.6
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 8.5e-07 57.0 51 60.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 57.7
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.9e-06 55.8 53 54.7
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 55.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 5.5e-06 54.3 52 55.8
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 5.5e-06 54.3 52 59.6
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 5.5e-06 54.3 52 59.6
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 7.2e-06 53.9 52 59.6
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 9.4e-06 53.5 50 52.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 9.4e-06 53.5 50 52.0


User provided reference genes

Program Settings