Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 4.6e-80 301.2 158 100.0
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 2.3e-79 298.9 158 99.4
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 6.7e-79 297.4 158 98.1
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 1.5e-70 269.6 158 92.4
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 5.3e-68 261.2 158 89.9
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 8.5e-66 253.8 169 82.2
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.8e-63 246.1 166 80.7
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 2.0e-62 242.7 164 78.7
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 5.7e-62 241.1 166 81.3
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 1.3e-61 240.0 163 79.1
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 2.2e-61 239.2 164 81.1
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 6.3e-61 237.7 163 77.9
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.8e-60 236.1 165 78.8
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.4e-60 235.7 163 77.9
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 1.0e-58 230.3 169 78.1
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 1.0e-58 230.3 169 78.1
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 2.2e-58 229.2 163 76.1
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 6.3e-45 184.5 158 64.6
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 9.1e-44 180.6 151 68.9
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 1.7e-42 176.4 178 59.6
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 2.3e-39 166.0 104 88.5
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 2.0e-38 162.9 170 58.8
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 1.3e-37 160.2 168 58.3
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.1e-36 157.1 161 59.0
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 3.1e-36 155.6 162 58.6
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.3e-34 150.2 157 58.6
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.5e-33 146.7 155 55.5
BcaC06g31007 Brassica carinata HOM05D004226 ORTHO05D004842 1.9e-33 146.4 153 59.5
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 5.6e-33 144.8 155 54.8
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 7.3e-33 144.4 155 54.8
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 9.5e-33 144.1 155 54.8
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 9.5e-33 144.1 162 51.9
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 1.6e-32 143.3 161 50.9
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 2.8e-32 142.5 156 53.8
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 6.1e-32 141.4 144 55.6
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 6.1e-32 141.4 159 52.8
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 1.8e-31 139.8 157 51.0
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 1.8e-31 139.8 162 52.5
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 2.3e-31 139.4 159 51.6
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 6.8e-31 137.9 150 54.0
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.2e-30 137.1 157 51.0
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 2.0e-30 136.3 157 51.6
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 2.6e-30 136.0 152 50.7
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 2.6e-30 136.0 148 53.4
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 4.4e-30 135.2 163 52.8
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 5.7e-30 134.8 156 54.5
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 5.7e-30 134.8 141 56.0
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 1.3e-29 133.7 163 51.5
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 1.7e-29 133.3 157 50.3
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 2.2e-29 132.9 160 48.8
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 2.9e-29 132.5 155 51.0
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 3.7e-29 132.1 164 48.2
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 3.7e-29 132.1 137 54.0
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 4.9e-29 131.7 143 53.1
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 6.4e-29 131.3 151 53.6
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 8.3e-29 131.0 162 51.9
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 8.3e-29 131.0 163 49.7
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 1.1e-28 130.6 158 49.4
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 4.1e-28 128.6 155 49.7
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 4.1e-28 128.6 150 49.3
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 7.0e-28 127.9 156 48.7
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 7.0e-28 127.9 144 53.5
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 9.2e-28 127.5 142 53.5
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.2e-27 127.1 159 47.2
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 2.0e-27 126.3 156 47.4
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 2.0e-27 126.3 159 46.5
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 2.7e-27 125.9 140 52.9
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.7e-27 125.9 144 52.8
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.5e-27 125.6 142 51.4
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 3.5e-27 125.6 163 49.7
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 4.6e-27 125.2 148 54.7
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 4.6e-27 125.2 147 51.0
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.3e-26 123.6 142 50.0
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 1.3e-26 123.6 154 46.1
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 1.3e-26 123.6 154 49.4
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 1.7e-26 123.2 135 47.4
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.7e-26 123.2 161 50.9
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.0e-26 122.5 155 46.5
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 3.9e-26 122.1 149 47.7
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 5.0e-26 121.7 142 50.7
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 6.6e-26 121.3 157 47.1
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 6.6e-26 121.3 144 48.6
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 6.6e-26 121.3 156 48.7
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 1.1e-25 120.6 139 46.0
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 1.1e-25 120.6 158 48.7
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.5e-25 120.2 138 52.2
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.9e-25 119.8 138 45.7
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 2.5e-25 119.4 137 47.4
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 3.3e-25 119.0 133 51.1
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 3.3e-25 119.0 172 48.8
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 7.3e-25 117.9 157 45.9
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 9.5e-25 117.5 134 45.5
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 9.5e-25 117.5 147 44.2
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 9.5e-25 117.5 143 51.7
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 1.6e-24 116.7 148 45.3
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 1.6e-24 116.7 185 45.9
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 2.8e-24 115.9 144 47.9
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 3.6e-24 115.5 140 49.3
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.0e-23 114.0 140 50.0
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 1.4e-23 113.6 184 41.8
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.4e-23 113.6 155 45.8
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.8e-23 113.2 137 48.9
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.8e-23 113.2 155 47.1
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 4.0e-23 112.1 164 43.3
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 4.0e-23 112.1 142 46.5
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 5.2e-23 111.7 142 46.5
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 8.9e-23 110.9 148 46.6
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 8.9e-23 110.9 165 42.4
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 2.6e-22 109.4 133 47.4
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 5.8e-22 108.2 143 47.6
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 7.5e-22 107.8 138 47.1
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 9.8e-22 107.5 165 45.5
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 2.9e-21 105.9 143 44.1
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 2.9e-21 105.9 120 51.7
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 2.9e-21 105.9 148 41.2
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.9e-21 105.9 148 41.9
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.4e-20 103.6 146 47.3
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 1.9e-20 103.2 140 49.3
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 1.9e-20 103.2 136 44.9
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 5.4e-20 101.7 142 45.8
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 7.0e-20 101.3 139 43.9
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.2e-19 100.5 145 44.8
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.6e-19 100.1 132 44.7
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 1.6e-19 100.1 147 38.8
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.7e-19 99.4 142 44.4
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 2.7e-19 99.4 129 45.7
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 6.0e-19 98.2 142 40.8
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.0e-18 97.4 145 44.8
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.3e-18 97.1 126 41.3
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 1.7e-18 96.7 169 39.6
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 5.0e-18 95.1 132 41.7
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 8.6e-18 94.4 144 40.3
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 1.5e-17 93.6 136 41.9
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 1.9e-17 93.2 123 45.5
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.5e-17 92.8 146 43.8
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 4.3e-17 92.0 154 40.9
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 7.3e-17 91.3 144 39.6
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.2e-16 90.5 136 44.1
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.8e-15 86.7 90 52.2
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.8e-15 86.7 90 52.2
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 1.8e-15 86.7 121 44.6
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 6.8e-15 84.7 145 39.3
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.6e-14 82.8 159 40.9
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 2.4e-12 76.3 161 37.9
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 1.3e-10 70.5 142 36.6
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 1.3e-10 70.5 80 43.8
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 5.1e-10 68.6 131 38.2
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 3.3e-09 65.9 101 45.5
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 4.3e-09 65.5 144 38.9
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 9.5e-09 64.3 144 38.2
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.5e-09 64.3 158 37.3
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 1.2e-08 63.9 87 48.3
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.6e-08 63.5 72 48.6
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 3.6e-08 62.4 144 38.2
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 3.6e-08 62.4 144 38.2
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 4.7e-08 62.0 151 37.7
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 6.2e-08 61.6 77 42.9
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 2.3e-07 59.7 77 48.1
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 5.8e-06 55.1 68 41.2


User provided reference genes

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