Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56390 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-54 215.7 100 100.0
BolC2t11697H Brassica oleracea HOM05D001603 ORTHO05D001393 1.6e-54 215.7 100 100.0
BcaC03g17639 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-53 213.0 100 99.0
A02p37320 Brassica napus HOM05D001603 ORTHO05D001393 5.8e-52 207.2 100 96.0
BraA02t08718Z Brassica rapa HOM05D001603 ORTHO05D001393 5.8e-52 207.2 100 96.0
BcaC03g17638 Brassica carinata HOM05D001603 ORTHO05D001393 2.1e-49 198.7 100 93.0
A02p37310 Brassica napus HOM05D001603 ORTHO05D001393 2.1e-49 198.7 100 92.0
BraA02t08717Z Brassica rapa HOM05D001603 ORTHO05D001393 2.1e-49 198.7 100 92.0
BcaB07g30009 Brassica carinata HOM05D001603 ORTHO05D001393 4.3e-47 191.0 100 90.0
BcaB07g30008 Brassica carinata HOM05D001603 ORTHO05D001393 4.4e-44 181.0 99 85.9
A02p37330 Brassica napus HOM05D001603 ORTHO05D001393 7.8e-41 170.2 101 78.2
BraA02t08719Z Brassica rapa HOM05D001603 ORTHO05D001393 7.8e-41 170.2 101 78.2
BcaB07g30007 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-38 162.9 97 74.2
BcaC03g17637 Brassica carinata HOM05D001603 ORTHO05D001393 1.6e-38 162.5 97 75.3
C02p56360 Brassica napus HOM05D001603 ORTHO05D001393 8.1e-38 160.2 97 75.3
BolC2t11693H Brassica oleracea HOM05D001603 ORTHO05D001393 8.1e-38 160.2 97 75.3
BraA02t08716Z Brassica rapa HOM05D001603 ORTHO05D001393 1.8e-37 159.1 97 74.2
A02p37300 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-36 156.0 97 73.2
BcaC06g30819 Brassica carinata HOM05D001603 ORTHO05D001393 1.7e-35 152.5 98 67.3
Thhalv10005180m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 7.1e-34 147.1 100 67.0
BcaC03g17640 Brassica carinata HOM05D001603 ORTHO05D001393 1.0e-32 143.3 88 75.0
Carub.0008s0778 Capsella rubella HOM05D001603 ORTHO05D001393 3.2e-26 121.7 109 55.0
AT5G48210 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.6e-25 119.4 99 57.6
CARHR184130 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.3e-24 116.3 101 57.4
AL8G20900 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.9e-15 85.9 68 61.8
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 9.0e-13 77.0 112 41.1
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-12 75.9 108 41.7
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.0e-12 75.9 105 40.0
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.6e-12 75.5 108 41.7
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.6e-12 75.5 108 41.7
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.6e-12 75.5 108 41.7
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.4e-12 75.1 108 41.7
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.4e-12 75.1 108 41.7
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.4e-12 75.1 108 41.7
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.5e-12 74.7 112 41.1
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 5.8e-12 74.3 115 36.5
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.7e-11 72.8 108 40.7
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.7e-11 72.8 108 40.7
RcHm_v2.0_Chr2g0131221 Rosa chinensis HOM05D001603 ORTHO05D001393 1.7e-11 72.8 103 42.7
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.2e-11 72.4 108 39.8
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 2.9e-11 72.0 86 43.0
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-10 69.7 76 46.1
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-10 69.7 108 38.9
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 1.4e-10 69.7 103 41.7
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.9e-10 69.3 99 36.4
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 2.5e-10 68.9 101 36.6
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-10 68.9 102 41.2
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-10 68.9 111 38.7
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.5e-10 68.9 88 38.6
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 4.2e-10 68.2 98 38.8
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 4.2e-10 68.2 106 38.7
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.5e-10 67.8 108 39.8
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.5e-10 67.8 108 39.8
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 5.5e-10 67.8 70 38.6
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 5.5e-10 67.8 77 41.6
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 7.1e-10 67.4 121 33.9
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 7.1e-10 67.4 105 41.0
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 7.1e-10 67.4 99 37.4
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 9.3e-10 67.0 103 41.7
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 9.3e-10 67.0 102 37.3
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 9.3e-10 67.0 94 38.3
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.3e-10 67.0 96 38.5
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.3e-10 67.0 85 40.0
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-09 66.6 76 47.4
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-09 66.6 76 47.4
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-09 66.6 111 37.8
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-09 66.6 76 47.4
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 1.2e-09 66.6 82 40.2
CARHR016560 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.2e-09 66.6 111 36.9
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.2e-09 66.6 93 37.6
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.6e-09 66.2 108 38.9
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 1.6e-09 66.2 135 31.9
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 1.6e-09 66.2 135 31.9
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 2.1e-09 65.9 77 45.5
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 2.1e-09 65.9 76 46.1
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 2.1e-09 65.9 76 47.4
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.1e-09 65.9 102 37.3
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.1e-09 65.9 102 37.3
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 76 46.1
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 80 43.8
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 76 47.4
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.7e-09 65.5 108 37.0
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-09 65.1 77 44.2
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 3.5e-09 65.1 82 40.2
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.6e-09 64.7 86 37.2
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 4.6e-09 64.7 75 46.7
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.6e-09 64.7 99 36.4
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 6.0e-09 64.3 103 39.8
Aa31sc88G60 Aethionema arabicum HOM05D001603 ORTHO05D001393 7.9e-09 63.9 98 39.8
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-09 63.9 76 46.1
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 1.0e-08 63.5 111 36.9
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 1.0e-08 63.5 79 45.6
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.0e-08 63.5 72 44.4
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 1.0e-08 63.5 82 36.6
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-08 63.2 103 38.8
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.8e-08 62.8 73 42.5
Thecc.09G137000 Theobroma cacao HOM05D001603 ORTHO05D001393 1.8e-08 62.8 95 34.7
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 2.3e-08 62.4 93 36.6
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.3e-08 62.4 106 38.7
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 2.3e-08 62.4 62 41.9
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.3e-08 62.4 103 39.8
Gorai.004G109100 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.3e-08 62.4 62 45.2
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 3.0e-08 62.0 91 34.1
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.9e-08 61.6 108 37.0
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.9e-08 61.6 108 37.0
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 5.1e-08 61.2 102 37.3
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 5.1e-08 61.2 67 47.8
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 6.7e-08 60.8 76 44.7
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 6.7e-08 60.8 92 35.9
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 8.7e-08 60.5 70 37.1
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 8.7e-08 60.5 70 37.1
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-07 60.1 76 44.7
Gohir.D08G101100 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.1e-07 60.1 62 43.5
Lsat_1_v5_gn_8_62881 Lactuca sativa HOM05D001603 ORTHO05D001393 1.1e-07 60.1 77 44.2
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.1e-07 60.1 67 41.8
AT5G51105 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.5e-07 59.7 106 32.1
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 1.5e-07 59.7 71 36.6
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-07 59.3 67 46.3
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 1.9e-07 59.3 107 34.6
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.9e-07 59.3 61 37.7
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 2.5e-07 58.9 102 32.4
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 3.3e-07 58.5 70 37.1
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 3.3e-07 58.5 68 36.8
THA.LOC104811131 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.3e-07 58.5 65 41.5
THA.LOC104811299 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.3e-07 58.5 65 41.5
Gorai.013G023500 Gossypium raimondii HOM05D001603 ORTHO05D001393 5.7e-07 57.8 77 39.0
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 5.7e-07 57.8 61 39.3
AT5G36659 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.4e-07 57.4 94 39.4
CARHR256980 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.4e-07 57.4 68 39.7
Glyma.05G187500 Glycine max HOM05D001595 ORTHO05D001573 1.3e-06 56.6 74 37.8
CAN.G184.41 Capsicum annuum HOM05D001603 ORTHO05D001393 2.1e-06 55.8 80 32.5
CARHR274650 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.8e-06 55.5 61 44.3
CAN.G184.54 Capsicum annuum HOM05D001603 ORTHO05D001393 6.2e-06 54.3 68 32.4
Glyma.08G145800 Glycine max HOM05D001595 ORTHO05D001573 6.2e-06 54.3 74 36.5
SGA_v2.0_scaffold24G10427 Striga asiatica HOM05D001603 ORTHO05D001393 6.2e-06 54.3 61 36.1
Thecc.10G154400 Theobroma cacao HOM05D041229 ORTHO05D034836 6.2e-06 54.3 62 38.7


User provided reference genes

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