Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56360 Brassica napus HOM05D001603 ORTHO05D001393 5.2e-53 210.7 100 100.0
BolC2t11693H Brassica oleracea HOM05D001603 ORTHO05D001393 5.2e-53 210.7 100 100.0
BcaC03g17637 Brassica carinata HOM05D001603 ORTHO05D001393 9.8e-52 206.5 100 98.0
BraA02t08716Z Brassica rapa HOM05D001603 ORTHO05D001393 1.1e-50 203.0 100 97.0
A02p37300 Brassica napus HOM05D001603 ORTHO05D001393 9.2e-50 199.9 100 96.0
BcaB07g30007 Brassica carinata HOM05D001603 ORTHO05D001393 3.3e-47 191.4 100 90.0
C02p56390 Brassica napus HOM05D001603 ORTHO05D001393 3.1e-37 158.3 97 75.3
BolC2t11697H Brassica oleracea HOM05D001603 ORTHO05D001393 3.1e-37 158.3 97 75.3
BcaC03g17639 Brassica carinata HOM05D001603 ORTHO05D001393 8.9e-37 156.8 101 73.3
A02p37320 Brassica napus HOM05D001603 ORTHO05D001393 9.9e-36 153.3 101 72.3
BraA02t08718Z Brassica rapa HOM05D001603 ORTHO05D001393 9.9e-36 153.3 101 72.3
BcaB07g30009 Brassica carinata HOM05D001603 ORTHO05D001393 4.9e-35 151.0 97 75.3
A02p37310 Brassica napus HOM05D001603 ORTHO05D001393 4.9e-35 151.0 101 71.3
BraA02t08717Z Brassica rapa HOM05D001603 ORTHO05D001393 1.1e-34 149.8 97 72.2
BcaC03g17638 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-34 149.4 97 73.2
BcaC06g30819 Brassica carinata HOM05D001603 ORTHO05D001393 2.7e-33 145.2 100 67.0
Thhalv10005180m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.3e-32 142.9 100 68.0
A02p37330 Brassica napus HOM05D001603 ORTHO05D001393 3.9e-32 141.4 98 68.4
BraA02t08719Z Brassica rapa HOM05D001603 ORTHO05D001393 3.9e-32 141.4 98 68.4
BcaB07g30008 Brassica carinata HOM05D001603 ORTHO05D001393 4.3e-31 137.9 97 68.0
Carub.0008s0778 Capsella rubella HOM05D001603 ORTHO05D001393 4.4e-28 127.9 111 55.0
AT5G48210 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.2e-27 125.6 98 60.2
CARHR184130 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.2e-27 125.6 99 59.6
BcaC03g17640 Brassica carinata HOM05D001603 ORTHO05D001393 2.7e-25 118.6 87 66.7
AL8G20900 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 3.2e-18 95.1 69 65.2
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 1.2e-12 76.6 99 39.4
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 1.0e-11 73.6 98 42.9
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 4.9e-11 71.2 106 41.5
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 8.4e-11 70.5 107 41.1
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 8.4e-11 70.5 77 49.4
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-10 70.1 77 50.6
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-10 70.1 77 50.6
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-10 70.1 79 50.6
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-10 70.1 77 50.6
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-10 69.7 106 40.6
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-10 68.9 77 50.6
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 3.2e-10 68.6 77 49.4
A03p15020 Brassica napus HOM05D001603 ORTHO05D001393 4.2e-10 68.2 80 41.2
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 4.2e-10 68.2 107 40.2
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 4.2e-10 68.2 77 48.1
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 4.2e-10 68.2 77 48.1
BraA03t10796Z Brassica rapa HOM05D001603 ORTHO05D001393 4.2e-10 68.2 80 41.2
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.5e-10 67.8 105 39.0
C03p17510 Brassica napus HOM05D001603 ORTHO05D001393 5.5e-10 67.8 80 40.0
BolC3t14164H Brassica oleracea HOM05D001603 ORTHO05D001393 5.5e-10 67.8 80 40.0
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 7.1e-10 67.4 79 38.0
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 7.1e-10 67.4 94 38.3
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 7.1e-10 67.4 97 39.2
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 9.3e-10 67.0 99 35.4
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 9.3e-10 67.0 69 53.6
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 9.3e-10 67.0 110 36.4
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 1.2e-09 66.6 96 38.5
BcaC01g06072 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-09 66.6 75 42.7
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-09 66.6 69 52.2
BolC3t14309H Brassica oleracea HOM05D001603 ORTHO05D001393 1.2e-09 66.6 75 42.7
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 1.2e-09 66.6 76 40.8
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 1.6e-09 66.2 93 35.5
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-09 66.2 77 48.1
C03p19220 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-09 66.2 75 42.7
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.6e-09 66.2 102 38.2
Sp2g17840 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.6e-09 66.2 102 35.3
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.6e-09 66.2 99 37.4
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 2.1e-09 65.9 108 38.9
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 2.1e-09 65.9 68 47.1
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-09 65.5 105 39.0
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 104 34.6
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 80 42.5
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-09 65.5 77 46.8
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 2.7e-09 65.5 104 34.6
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 2.7e-09 65.5 79 39.2
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.5e-09 65.1 105 39.0
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 3.5e-09 65.1 79 48.1
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-09 65.1 100 40.0
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-09 65.1 69 52.2
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-09 65.1 77 48.1
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 3.5e-09 65.1 70 40.0
Carub.0008s1421 Capsella rubella HOM05D001603 ORTHO05D001393 3.5e-09 65.1 88 36.4
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.6e-09 64.7 105 39.0
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.6e-09 64.7 105 39.0
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 4.6e-09 64.7 104 34.6
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.6e-09 64.7 110 35.5
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.6e-09 64.7 78 39.7
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.0e-09 64.3 105 39.0
AT5G53742 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.0e-09 64.3 72 40.3
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 6.0e-09 64.3 77 48.1
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 7.9e-09 63.9 73 35.6
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.9e-09 63.9 105 39.0
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-09 63.9 77 48.1
FAN06G4924 Fragaria x ananassa HOM05D001603 ORTHO05D001393 7.9e-09 63.9 103 36.9
Sp6g09890 Schrenkiella parvula HOM05D001603 ORTHO05D001393 7.9e-09 63.9 101 36.6
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.0e-08 63.5 107 36.4
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.0e-08 63.5 111 36.0
A03p16340 Brassica napus HOM05D001603 ORTHO05D001393 1.0e-08 63.5 75 41.3
BraA03t10924Z Brassica rapa HOM05D001603 ORTHO05D001393 1.0e-08 63.5 75 41.3
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.0e-08 63.5 105 35.2
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 1.0e-08 63.5 88 33.0
RcHm_v2.0_Chr1g0323971 Rosa chinensis HOM05D001603 ORTHO05D001393 1.0e-08 63.5 104 37.5
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-08 63.2 74 43.2
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-08 63.2 104 33.7
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-08 63.2 104 33.7
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 1.3e-08 63.2 98 34.7
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.8e-08 62.8 99 37.4
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.3e-08 62.4 105 38.1
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.3e-08 62.4 105 38.1
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.3e-08 62.4 65 41.5
A03p16350 Brassica napus HOM05D001603 ORTHO05D001393 3.0e-08 62.0 74 41.9
C03p19230 Brassica napus HOM05D001603 ORTHO05D001393 3.0e-08 62.0 74 41.9
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 3.0e-08 62.0 72 37.5
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.0e-08 62.0 82 39.0
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 3.9e-08 61.6 102 33.3
BcaC01g06071 Brassica carinata HOM05D001603 ORTHO05D001393 3.9e-08 61.6 74 41.9
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 3.9e-08 61.6 83 38.6
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.9e-08 61.6 76 40.8
CAN.G184.54 Capsicum annuum HOM05D001603 ORTHO05D001393 5.1e-08 61.2 109 30.3
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 5.1e-08 61.2 107 34.6
PGSC0003DMG401030716 Solanum tuberosum HOM05D001603 ORTHO05D001393 5.1e-08 61.2 80 36.2
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 8.7e-08 60.5 81 42.0
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 8.7e-08 60.5 67 41.8
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.1e-07 60.1 76 40.8
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-07 60.1 72 36.1
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 1.1e-07 60.1 72 36.1
FvH4_1g02090 Fragaria vesca HOM05D001603 ORTHO05D001393 1.1e-07 60.1 80 36.2
FAN19G2115 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.1e-07 60.1 80 36.2
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 1.1e-07 60.1 106 37.7
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.5e-07 59.7 100 35.0
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 77 46.8
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 1.9e-07 59.3 90 37.8
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.9e-07 59.3 67 41.8
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.9e-07 59.3 88 38.6
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-07 58.9 105 36.2
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-07 58.9 105 36.2
BcaB07g29691 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-07 58.9 72 36.1
CARHR277370 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.5e-07 58.9 72 37.5
BcaC03g18210 Brassica carinata HOM05D001603 ORTHO05D001393 3.3e-07 58.5 72 34.7
A02p42780 Brassica napus HOM05D001603 ORTHO05D001393 3.3e-07 58.5 72 34.7
BraA02t09204Z Brassica rapa HOM05D001603 ORTHO05D001393 3.3e-07 58.5 72 34.7
Carub.0007s0514 Capsella rubella HOM05D001603 ORTHO05D001393 3.3e-07 58.5 66 37.9
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 3.3e-07 58.5 90 36.7
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 4.3e-07 58.2 69 37.7
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.3e-07 58.2 105 36.2
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.3e-07 58.2 105 36.2
BcaC01g06264 Brassica carinata HOM05D001603 ORTHO05D001393 4.3e-07 58.2 78 35.9
Carub.0008s2422 Capsella rubella HOM05D001603 ORTHO05D001393 4.3e-07 58.2 72 33.3
CARHR267040 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.3e-07 58.2 80 33.8
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 7.4e-07 57.4 70 37.1
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 7.4e-07 57.4 65 40.0
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 7.4e-07 57.4 65 40.0
Thecc.09G137000 Theobroma cacao HOM05D001603 ORTHO05D001393 7.4e-07 57.4 95 33.7
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 9.6e-07 57.0 70 37.1
C04p54650 Brassica napus HOM05D001603 ORTHO05D001393 9.6e-07 57.0 108 31.5
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-06 56.6 105 35.2
BcaC02g08400 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
BcaC02g08403 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
BcaC02g08405 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
BcaC02g08407 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
C04p53860 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
C04p54690 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
BolC4t27006H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
BolC4t27013H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 56.6 108 31.5
Gorai.013G023700 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.3e-06 56.6 78 37.2
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.6e-06 56.2 101 31.7
COL.COLO4_33373 Corchorus olitorius HOM05D001603 ORTHO05D001393 1.6e-06 56.2 98 38.8
Aqoxy6G02760 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 2.1e-06 55.8 64 35.9
BcaC02g08401 Brassica carinata HOM05D001603 ORTHO05D001393 2.1e-06 55.8 108 31.5
BolC4t27011H Brassica oleracea HOM05D001603 ORTHO05D001393 2.1e-06 55.8 108 31.5
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.1e-06 55.8 78 37.2
Thecc.10G154400 Theobroma cacao HOM05D041229 ORTHO05D034836 2.1e-06 55.8 62 41.9
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 2.8e-06 55.5 70 37.1
C04p54600 Brassica napus HOM05D001603 ORTHO05D001393 2.8e-06 55.5 115 28.7
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.8e-06 55.5 65 38.5
COL.COLO4_33374 Corchorus olitorius HOM05D001603 ORTHO05D001393 3.7e-06 55.1 98 38.8
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 3.7e-06 55.1 78 37.2
TWI34G1802 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 4.8e-06 54.7 76 38.2
BolC4t27003H Brassica oleracea HOM05D001603 ORTHO05D001393 6.2e-06 54.3 112 31.2
MD17G1163700 Malus domestica HOM05D001603 ORTHO05D001393 6.2e-06 54.3 72 34.7
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.2e-06 53.9 104 35.6
Gorai.013G023600 Gossypium raimondii HOM05D001603 ORTHO05D001393 8.2e-06 53.9 61 42.6
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 8.2e-06 53.9 67 40.3


User provided reference genes

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