Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 2159.4 1126 100.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 0.0e+00 2119.7 1126 98.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 2113.2 1126 98.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 0.0e+00 2001.5 1136 92.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1988.0 1136 92.1
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1903.6 1124 88.9
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 0.0e+00 1762.3 1120 81.7
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1756.9 1136 81.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 0.0e+00 1694.1 1136 77.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 0.0e+00 1692.2 1130 77.7
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 0.0e+00 1656.3 1136 76.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 0.0e+00 1619.4 1133 75.6
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 0.0e+00 1512.3 1130 69.6
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1318.9 1138 61.4
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 3.0e-306 1055.4 1148 50.3
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 4.3e-305 1051.6 1159 50.0
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 4.8e-304 1048.1 1160 50.9
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 4.0e-303 1045.0 1152 51.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 1.5e-302 1043.1 1228 48.9
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 3.9e-298 1028.5 1151 50.3
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 9.6e-297 1023.8 1158 49.2
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.6e-296 1023.1 1145 49.4
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 7.6e-294 1014.2 1159 49.3
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 5.5e-292 1008.1 1155 48.7
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.5e-289 999.2 1155 48.7
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 2.2e-288 996.1 1161 48.7
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 4.8e-288 995.0 1158 48.4
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 6.3e-288 994.6 1149 49.2
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 2.4e-287 992.6 1163 48.3
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 4.5e-286 988.4 1137 47.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.4e-282 976.9 1151 47.4
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 2.8e-280 969.1 1149 47.3
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.4e-279 966.8 1150 48.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 3.1e-279 965.7 1162 46.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.2e-277 959.5 1153 47.9
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 2.7e-275 952.6 1146 45.9
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 6.1e-275 951.4 1155 46.9
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.0e-274 949.1 1140 45.8
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 2.2e-272 943.0 1157 46.3
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.7e-269 933.3 1149 47.0
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 4.2e-268 928.7 1208 45.8
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.6e-267 926.8 1157 46.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 2.3e-266 922.9 1152 46.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.0e-266 922.2 1094 47.4
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 2.8e-264 916.0 1145 46.1
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.1e-263 914.1 1143 45.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 5.3e-263 911.8 1157 45.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 2.9e-261 906.0 1154 45.9
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.1e-260 904.0 1099 46.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 3.0e-258 896.0 1138 45.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 1.2e-257 894.0 1158 44.6
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 3.4e-257 892.5 1156 45.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 5.7e-257 891.7 1114 45.8
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.7e-256 890.2 1140 43.7
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.7e-256 889.0 1125 46.0
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 2.7e-254 882.9 1140 43.3
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 2.3e-253 879.8 1148 44.2
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 2.1e-251 873.2 1148 44.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 3.6e-251 872.5 1133 44.2
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 6.1e-251 871.7 1132 44.3
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 4.4e-249 865.5 1150 42.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 2.8e-248 862.8 1148 43.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 2.4e-247 859.8 1160 42.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 7.8e-246 854.7 1157 43.5
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.3e-244 849.0 1153 43.0
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.8e-243 846.3 1151 44.9
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.0e-242 844.3 1149 43.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.3e-242 843.2 1142 43.7
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.2e-242 842.0 1143 40.9
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 8.3e-240 834.7 1065 46.5
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.5e-238 829.3 1127 41.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 6.2e-235 818.5 1232 41.2
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 6.4e-232 808.5 1134 41.2
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 2.1e-227 793.5 1095 43.4
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 4.7e-227 792.3 1120 40.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.3e-224 784.3 1176 40.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.9e-224 783.1 1004 46.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.7e-224 782.7 1138 41.2
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.1e-222 776.9 1126 40.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.6e-217 760.0 1041 45.0
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.9e-216 756.5 1028 41.7
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 6.9e-210 735.3 1098 40.6
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.5e-209 734.2 1096 41.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 2.0e-209 733.8 1068 41.2
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.3e-205 721.1 523 68.6
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.3e-205 721.1 1121 38.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.0e-201 707.2 1148 38.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 7.6e-201 705.3 1156 38.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.8e-194 684.1 950 43.5
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.4e-193 679.9 1132 37.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.4e-192 675.6 1061 38.3
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.0e-189 668.3 1144 36.9
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.9e-188 664.1 932 43.2
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-172 610.9 428 74.8
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 6.3e-171 605.9 905 40.4
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 3.3e-164 583.6 939 37.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.5e-143 514.2 1060 34.9
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.2e-134 485.3 1179 31.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.2e-117 426.8 340 69.4
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.1e-113 414.8 1201 29.1
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.9e-103 381.7 655 36.9
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 6.0e-97 360.1 1119 28.2
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.7e-96 358.6 502 43.8
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.3e-95 353.2 435 45.1
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.0e-93 347.4 441 46.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.0e-92 345.1 695 33.5
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.6e-81 308.9 335 48.4
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.8e-77 295.4 430 45.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.6e-73 282.3 233 58.8
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.9e-60 237.3 233 51.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-58 231.1 265 47.2
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.1e-57 228.8 1297 23.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.5e-51 206.8 205 51.7
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.5e-50 205.3 153 61.4
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 7.0e-45 187.2 320 39.7
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 4.5e-44 184.5 148 72.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 4.5e-44 184.5 148 72.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 7.7e-44 183.7 180 52.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.2e-38 163.7 123 66.7
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 4.2e-34 151.4 197 43.7
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.7e-31 141.0 158 44.9
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.2e-26 125.2 117 53.8
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 9.4e-26 123.6 132 48.5
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.4e-24 119.8 230 36.1
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.7e-22 111.7 97 60.8
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.1e-21 110.2 119 46.2
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.6e-20 106.3 173 38.2
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.9e-19 102.1 1262 20.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.8e-19 101.7 180 36.1
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.8e-19 101.7 178 36.0
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.5e-18 99.0 121 45.5
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-17 95.9 102 51.0
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-17 95.9 102 51.0
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 2.8e-17 95.5 145 35.2
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.5e-15 89.7 63 50.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.5e-15 87.4 127 40.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 9.8e-15 87.0 55 72.7
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.3e-14 86.7 73 60.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 7.0e-13 80.9 93 45.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.6e-12 79.7 90 45.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.7e-12 79.0 279 28.3
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 3.5e-12 78.6 63 58.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 4.3e-10 71.6 147 32.0
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.6e-09 69.7 92 40.2
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-08 65.5 68 47.1
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-08 65.5 68 47.1
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 5.2e-08 64.7 247 29.6
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 8.3e-06 57.4 44 56.8


User provided reference genes

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