Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-93 346.7 175 100.0
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.3e-93 344.4 175 99.4
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.1e-89 332.4 175 96.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 7.9e-89 330.5 175 95.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-88 328.9 176 95.5
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.4e-77 292.4 177 87.6
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.6e-73 279.6 175 82.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.6e-73 278.5 175 81.7
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.6e-73 278.5 175 81.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 4.7e-73 278.1 175 82.3
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.1e-71 273.5 171 84.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.3e-71 271.9 176 80.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 9.7e-71 270.4 176 80.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.2e-70 269.2 172 82.6
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 9.1e-69 263.8 177 80.8
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 9.1e-69 263.8 178 78.7
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 4.1e-61 238.4 175 71.4
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.8e-56 223.0 176 65.9
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-55 219.2 125 86.4
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.1e-53 213.8 118 89.8
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 7.5e-47 191.0 171 57.9
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-46 190.3 147 64.6
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.3e-46 190.3 147 64.6
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.2e-46 189.5 146 64.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.8e-46 189.1 142 66.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 8.3e-46 187.6 168 58.9
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 3.1e-45 185.7 143 65.0
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 4.1e-45 185.3 168 57.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 4.1e-45 185.3 149 61.7
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.1e-45 185.3 144 63.9
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 4.1e-45 185.3 150 61.3
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.4e-45 184.9 149 61.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 7.0e-45 184.5 178 53.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 7.0e-45 184.5 178 53.9
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.2e-44 183.7 171 56.1
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.6e-44 183.3 149 62.4
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.0e-44 183.0 153 60.8
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.0e-44 183.0 165 57.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 2.0e-44 183.0 147 59.9
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.0e-44 183.0 145 63.4
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.0e-44 183.0 171 57.9
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.0e-44 183.0 149 61.1
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 2.7e-44 182.6 170 54.1
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.7e-44 182.6 167 55.7
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.0e-43 180.6 147 60.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.0e-43 180.6 168 54.8
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.0e-43 180.6 157 59.2
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.3e-43 180.3 147 63.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.3e-43 180.3 172 56.4
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.7e-43 179.9 167 55.7
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.7e-43 179.9 147 62.6
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.3e-43 179.5 152 57.2
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.3e-43 179.5 168 55.4
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.3e-43 179.5 147 61.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 3.8e-43 178.7 143 61.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.0e-43 178.3 170 55.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.0e-43 178.3 170 55.3
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.0e-43 178.3 170 55.3
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 5.0e-43 178.3 143 61.5
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 5.0e-43 178.3 145 63.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.6e-43 177.9 170 55.3
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 6.6e-43 177.9 145 62.1
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 6.6e-43 177.9 153 56.9
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.5e-42 176.8 150 59.3
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.9e-42 176.4 170 55.3
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.9e-42 176.4 164 54.9
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.9e-42 176.4 149 59.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.5e-42 176.0 149 55.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.3e-42 175.6 152 55.9
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.2e-42 175.3 147 57.1
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.6e-42 174.9 147 59.9
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 7.2e-42 174.5 169 52.7
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-41 173.7 148 60.8
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.2e-41 173.7 172 54.1
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.2e-41 173.7 163 57.1
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.1e-41 172.9 149 55.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.8e-41 172.6 145 57.9
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 4.7e-41 171.8 149 55.0
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 6.1e-41 171.4 151 59.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 8.0e-41 171.0 175 52.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 8.0e-41 171.0 146 58.2
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.0e-40 170.6 147 58.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.4e-40 170.2 175 53.1
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.3e-40 169.5 151 57.6
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 8.9e-40 167.5 141 57.4
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-39 167.2 153 55.6
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.5e-39 166.8 179 51.4
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.6e-39 166.0 162 53.1
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.4e-39 165.6 176 51.7
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.7e-39 164.9 155 54.8
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 9.8e-39 164.1 161 54.0
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-38 162.5 104 77.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.9e-38 162.5 159 56.0
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.9e-38 162.5 172 51.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.4e-37 160.2 147 55.1
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.4e-37 159.5 146 55.5
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 4.1e-37 158.7 155 52.9
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.1e-37 158.7 158 51.9
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.4e-37 158.3 145 57.2
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 5.4e-37 158.3 148 54.7
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 9.2e-37 157.5 125 61.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-36 157.1 236 40.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.7e-36 156.0 144 53.5
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.0e-35 154.1 143 53.8
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 6.6e-35 151.4 166 51.2
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 5.6e-34 148.3 167 46.7
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.6e-33 146.7 141 51.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 2.1e-33 146.4 125 58.4
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 2.8e-33 146.0 141 53.9
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.6e-33 145.6 123 57.7
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 8.0e-33 144.4 130 56.9
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.8e-32 143.3 149 53.0
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.2e-31 140.6 147 49.7
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 2.6e-31 139.4 205 41.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 3.4e-31 139.0 154 48.1
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 4.4e-31 138.7 135 51.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 6.4e-30 134.8 121 50.4
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-29 132.5 88 76.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.7e-28 129.4 123 51.2
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 6.0e-28 128.3 88 73.9
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.0e-27 127.5 88 75.0
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.0e-27 127.5 88 75.0
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.3e-27 126.3 166 42.2
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 6.6e-27 124.8 88 72.7
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.5e-26 123.6 147 44.2
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.5e-26 123.6 147 44.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-25 120.2 128 49.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-25 120.2 128 49.2
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-25 119.4 88 69.3
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-25 119.4 88 69.3
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 6.2e-25 118.2 155 41.9
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.2e-25 118.2 118 53.4
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.4e-24 117.1 150 44.7
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 6.8e-24 114.8 201 38.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.5e-23 113.6 243 31.7
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.0e-23 113.2 142 43.7
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.0e-23 113.2 171 38.0
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.2e-21 105.9 103 49.5
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 6.0e-20 101.7 62 88.7
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 6.6e-19 98.2 119 48.7
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.1e-18 97.4 113 48.7
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.7e-14 82.4 169 34.3
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 2.3e-11 73.2 56 64.3
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.4e-07 58.9 61 49.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 3.8e-06 55.8 48 56.2


User provided reference genes

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