Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.1e-241 839.7 468 100.0
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.1e-241 839.7 468 100.0
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 3.5e-224 781.6 468 94.0
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 2.6e-211 738.8 485 84.5
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 5.7e-211 737.6 488 84.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.4e-161 573.5 536 65.3
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 1.7e-154 550.1 486 68.3
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.9e-137 493.4 486 63.2
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 6.5e-122 441.8 581 53.9
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 5.2e-119 432.2 540 54.1
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 1.3e-117 427.6 528 57.2
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 5.3e-116 422.2 555 51.4
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 1.8e-111 407.1 576 51.6
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 6.8e-111 405.2 484 55.6
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 6.8e-111 405.2 484 55.6
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.8e-87 327.4 542 45.4
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.5e-81 307.0 536 47.2
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.5e-78 297.7 543 43.3
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.9e-76 290.8 522 43.3
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 1.9e-76 290.8 269 65.1
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.5e-62 244.6 490 42.0
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.5e-62 244.6 490 42.0
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-59 235.0 507 40.2
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 8.7e-58 228.8 364 47.3
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 6.2e-56 222.6 490 41.2
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 6.7e-42 176.0 518 33.4
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 1.6e-40 171.4 425 35.3
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 3.5e-35 153.7 369 36.9
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 3.0e-34 150.6 496 32.7
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 3.0e-34 150.6 309 38.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 3.9e-34 150.2 296 38.5
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 6.7e-34 149.4 349 36.1
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.5e-33 148.3 413 34.6
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.5e-33 148.3 400 34.5
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.9e-33 147.9 448 31.0
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 2.5e-33 147.5 448 35.3
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 3.3e-33 147.1 443 33.2
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 9.6e-33 145.6 347 36.3
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 9.6e-33 145.6 347 36.3
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 1.6e-32 144.8 367 36.2
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 2.8e-32 144.1 315 38.4
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.4e-31 141.7 390 32.6
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.8e-31 141.4 396 36.4
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.4e-31 141.0 390 32.8
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.1e-31 140.2 415 34.7
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.0e-30 137.9 388 33.8
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.6e-30 137.5 338 35.5
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 2.6e-30 137.5 390 31.5
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 7.6e-30 136.0 255 42.7
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 1.0e-29 135.6 387 31.8
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 2.9e-29 134.0 372 32.5
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.9e-29 134.0 435 31.0
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.9e-29 134.0 424 31.6
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 3.8e-29 133.7 405 31.1
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 6.5e-29 132.9 233 41.2
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 1.1e-28 132.1 425 32.5
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.2e-27 128.6 369 35.5
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 1.6e-27 128.3 367 33.2
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.1e-27 127.9 273 35.9
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.5e-27 127.1 421 33.0
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 4.6e-27 126.7 176 47.2
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 7.9e-27 125.9 315 35.2
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.0e-26 125.6 302 35.8
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 3.0e-26 124.0 353 32.0
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 3.9e-26 123.6 308 36.4
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 3.9e-26 123.6 391 30.7
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 3.9e-26 123.6 403 32.8
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.1e-25 122.1 332 34.6
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.9e-25 121.3 286 35.3
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.5e-25 120.9 399 32.3
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 3.3e-25 120.6 462 28.6
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 4.3e-25 120.2 332 32.8
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 4.3e-25 120.2 390 34.1
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 4.3e-25 120.2 277 33.9
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 5.7e-25 119.8 319 33.9
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 7.4e-25 119.4 178 43.3
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 7.4e-25 119.4 311 35.4
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 7.4e-25 119.4 199 41.7
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 9.7e-25 119.0 377 31.3
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 1.6e-24 118.2 110 60.0
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 1.6e-24 118.2 128 51.6
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 2.8e-24 117.5 276 35.5
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 3.7e-24 117.1 430 29.8
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.7e-24 117.1 386 31.9
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 6.3e-24 116.3 282 35.8
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 1.1e-23 115.5 436 32.8
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 1.8e-23 114.8 441 31.7
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 3.1e-23 114.0 386 30.3
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 4.1e-23 113.6 390 31.3
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 9.0e-23 112.5 254 35.4
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 9.0e-23 112.5 179 45.3
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 1.5e-22 111.7 362 30.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 3.4e-22 110.5 308 32.5
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 7.7e-22 109.4 337 30.9
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 7.7e-22 109.4 128 48.4
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.3e-21 108.6 445 30.1
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 2.9e-21 107.5 385 31.4
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 3.8e-21 107.1 351 30.2
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 3.8e-21 107.1 280 33.2
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 5.0e-21 106.7 317 32.5
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 1.1e-20 105.5 335 32.5
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 1.6e-19 101.7 140 49.3
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.6e-19 101.7 399 29.3
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 4.6e-19 100.1 286 33.2
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.8e-18 98.2 444 29.3
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 5.7e-17 93.2 189 36.0
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 9.7e-17 92.4 406 29.1
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.7e-16 91.7 178 37.1
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 6.3e-16 89.7 138 41.3
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 1.1e-15 89.0 197 35.0
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 1.8e-15 88.2 257 33.1
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 2.4e-15 87.8 171 45.0
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 6.9e-15 86.3 106 47.2
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 7.7e-14 82.8 104 53.8
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.9e-12 78.2 123 43.9
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 5.5e-12 76.6 304 27.3
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 5.5e-12 76.6 306 30.7
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 6.1e-11 73.2 140 38.6
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.7e-08 65.1 40 77.5
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 9.1e-07 59.3 171 30.4
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.2e-06 58.9 119 33.6
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 2.0e-06 58.2 157 31.8
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.6e-06 57.8 181 28.2
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 3.5e-06 57.4 130 33.1
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 5.9e-06 56.6 122 34.4
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 5.9e-06 56.6 103 38.8
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 5.9e-06 56.6 103 38.8
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 5.9e-06 56.6 103 38.8
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 5.9e-06 56.6 103 38.8
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 5.9e-06 56.6 103 38.8
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 5.9e-06 56.6 182 28.6
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 7.7e-06 56.2 122 33.6
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 7.7e-06 56.2 133 30.8
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 7.7e-06 56.2 178 29.8


User provided reference genes

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