Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p55200 Brassica napus HOM05D000553 ORTHO05D020064 1.3e-60 236.1 112 100.0
A02p36220 Brassica napus HOM05D000553 ORTHO05D020064 1.6e-55 219.2 112 92.9
BraA02t08622Z Brassica rapa HOM05D000553 ORTHO05D020064 1.6e-55 219.2 112 92.9
BcaB07g30104 Brassica carinata HOM05D000553 ORTHO05D020064 3.2e-43 178.3 148 62.2
BolC2t11568H Brassica oleracea HOM05D002985 ORTHO05D003335 3.6e-42 174.9 97 86.6
BraA02t08620Z Brassica rapa HOM05D000553 ORTHO05D020064 1.8e-30 136.0 112 60.7
C02p55190 Brassica napus HOM05D000553 ORTHO05D020064 2.1e-26 122.5 112 57.1
BraA02t08621Z Brassica rapa HOM05D000553 ORTHO05D020064 8.0e-26 120.6 112 57.1
BcaC03g17539 Brassica carinata HOM05D000114 ORTHO05D021723 1.3e-23 113.2 111 55.9
C02p55160 Brassica napus HOM05D000114 ORTHO05D021723 1.3e-23 113.2 111 55.9
BraA02t08617Z Brassica rapa HOM05D000553 ORTHO05D021723 8.2e-23 110.5 111 55.0
BcaC03g17541 Brassica carinata HOM05D000425 ORTHO05D000373 1.3e-20 103.2 65 78.5
BcaB07g30105 Brassica carinata HOM05D000553 ORTHO05D021723 1.5e-16 89.7 117 42.7
BolC2t11565H Brassica oleracea HOM05D000553 ORTHO05D021723 1.5e-11 73.2 77 51.9
A02p36210 Brassica napus HOM05D007244 ORTHO05D042440 8.0e-10 67.4 36 75.0
TWI74G0106 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 1.4e-09 66.6 122 34.4
EL10Ac2g04816 Beta vulgaris HOM05D000553 ORTHO05D000460 4.0e-09 65.1 119 33.6
Lalb_Chr04g0250621 Lupinus albus HOM05D000553 ORTHO05D000460 5.2e-09 64.7 119 32.8
PGR044G0199 Punica granatum HOM05D000553 ORTHO05D000460 1.2e-08 63.5 119 31.9
Ah.16g103430 Amaranthus hybridus HOM05D000553 ORTHO05D000460 1.5e-08 63.2 119 32.8
arahy.Tifrunner.gnm1.ann1.K8NNXW Arachis hypogaea HOM05D000553 ORTHO05D000460 1.5e-08 63.2 119 33.6
ECA247G3097 Erigeron canadensis HOM05D000553 ORTHO05D000460 1.5e-08 63.2 116 33.6
Potri.008G067100 Populus trichocarpa HOM05D000553 ORTHO05D000460 1.5e-08 63.2 118 33.1
Glyma.14G060000 Glycine max HOM05D000553 ORTHO05D000460 2.0e-08 62.8 120 32.5
Lalb_Chr10g0105121 Lupinus albus HOM05D000553 ORTHO05D000460 2.0e-08 62.8 119 32.8
LjContig00357g0010180 Lotus japonicus HOM05D000553 ORTHO05D000460 2.6e-08 62.4 119 31.9
Lj6g0002024 Lotus japonicus HOM05D000553 ORTHO05D000460 3.4e-08 62.0 117 32.5
Phvul.001G242000 Phaseolus vulgaris HOM05D000553 ORTHO05D000460 3.4e-08 62.0 119 32.8
TAR633G2493 Trochodendron aralioides HOM05D000553 ORTHO05D000460 3.4e-08 62.0 119 32.8
arahy.Tifrunner.gnm1.ann1.5I106H Arachis hypogaea HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.9
arahy.Tifrunner.gnm1.ann1.7A6EAY Arachis hypogaea HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.9
FvH4_7g24340 Fragaria vesca HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.1
FAN03G2890 Fragaria x ananassa HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.9
FAN06G1361 Fragaria x ananassa HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.1
Lalb_Chr17g0346741 Lupinus albus HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 31.1
Hund13849 Selenicereus undatus HOM05D000553 ORTHO05D000460 5.7e-08 61.2 119 32.8
Atru.chr8.2225 Acer truncatum HOM05D000553 ORTHO05D000460 7.5e-08 60.8 119 34.5
CARHR083330 Cardamine hirsuta HOM05D000553 ORTHO05D000460 7.5e-08 60.8 117 31.6
AUR62033411 Chenopodium quinoa HOM05D000553 ORTHO05D000460 7.5e-08 60.8 119 31.1
Ca_15269_v3 Cicer arietinum L. HOM05D000553 ORTHO05D003668 7.5e-08 60.8 118 33.1
RcHm_v2.0_Chr1g0370001 Rosa chinensis HOM05D000553 ORTHO05D000460 7.5e-08 60.8 118 31.4
Manes.07G128400 Manihot esculenta HOM05D000553 ORTHO05D000460 9.8e-08 60.5 118 32.2
THA.LOC104816207 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 9.8e-08 60.5 117 33.3
Duzib114G0020 Durio zibethinus HOM05D000553 ORTHO05D000460 1.3e-07 60.1 119 31.9
Gohir.A09G164600 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.3e-07 60.1 117 32.5
Gohir.D09G160200 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.3e-07 60.1 119 32.8
Gorai.006G181800 Gossypium raimondii HOM05D000553 ORTHO05D000460 1.3e-07 60.1 119 32.8
Medtr3g070330 Medicago truncatula HOM05D000553 ORTHO05D000460 1.3e-07 60.1 117 34.2
AL3G20010 Arabidopsis lyrata HOM05D000553 ORTHO05D000460 1.7e-07 59.7 117 32.5
CANSAT56G1463 Cannabis sativa HOM05D000553 ORTHO05D000460 1.7e-07 59.7 119 30.3
CANSAT56G3951 Cannabis sativa HOM05D000553 ORTHO05D000460 1.7e-07 59.7 119 30.3
Carub.0003s0812 Capsella rubella HOM05D000553 ORTHO05D000460 1.7e-07 59.7 122 31.1
AUR62011037 Chenopodium quinoa HOM05D000553 ORTHO05D000460 1.7e-07 59.7 118 33.1
Ciclev10033070m.g Citrus clementina HOM05D000553 ORTHO05D000460 1.7e-07 59.7 119 31.1
FAN01G1959 Fragaria x ananassa HOM05D000553 ORTHO05D000460 1.7e-07 59.7 117 30.8
FAN10G3202 Fragaria x ananassa HOM05D000553 ORTHO05D000460 1.7e-07 59.7 119 31.1
Glyma.18G028500 Glycine max HOM05D000553 ORTHO05D000460 1.7e-07 59.7 119 31.1
Gohir.A05G329500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.7e-07 59.7 118 31.4
Gohir.D04G067500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.7e-07 59.7 118 31.4
TWI09G1557 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 1.7e-07 59.7 118 31.4
TWI77G0351 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 1.7e-07 59.7 118 33.1
CAN.G154.12 Capsicum annuum HOM05D000553 ORTHO05D000460 2.2e-07 59.3 85 38.8
Cfa001329 Carpinus fangiana HOM05D000553 ORTHO05D000460 2.2e-07 59.3 119 31.1
PSO801G0637 Papaver somniferum HOM05D000553 ORTHO05D000460 2.2e-07 59.3 116 31.9
Zm00001eb216920 Zea mays HOM05D000553 ORTHO05D000460 2.2e-07 59.3 117 31.6
Cpa.g.sc19.186 Carica papaya HOM05D000553 ORTHO05D000460 2.8e-07 58.9 119 31.1
CiPaw.01G297500 Carya illinoinensis HOM05D000553 ORTHO05D000460 2.8e-07 58.9 119 31.1
Glyma.02G256700 Glycine max HOM05D000553 ORTHO05D000460 2.8e-07 58.9 120 30.8
Gohir.D13G016900 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.8e-07 58.9 119 31.1
Phvul.008G224700 Phaseolus vulgaris HOM05D000553 ORTHO05D000460 2.8e-07 58.9 85 36.5
SalBow4G2684 Salvia bowleyana HOM05D000553 ORTHO05D000460 2.8e-07 58.9 119 32.8
VMungo0647G1232 Vigna mungo HOM05D000553 ORTHO05D000460 2.8e-07 58.9 85 36.5
BcaB06g29128 Brassica carinata HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.9
CSS0025442 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.1
CSS0040155 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 3.7e-07 58.5 118 31.4
CiPaw.01G249500 Carya illinoinensis HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 32.8
Dinv23094 Davidia involucrata HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.1
Duzib093G0452 Durio zibethinus HOM05D000553 ORTHO05D000460 3.7e-07 58.5 117 33.3
Eucgr.J00225 Eucalyptus grandis HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.9
Glyma.11G228600 Glycine max HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.1
MD07G1220400 Malus domestica HOM05D000553 ORTHO05D000460 3.7e-07 58.5 116 31.9
Potri.010G190000 Populus trichocarpa HOM05D000553 ORTHO05D000460 3.7e-07 58.5 118 32.2
Prupe.2G248800 Prunus persica HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.9
QL07p035818 Quercus lobata HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.9
Sp4g22420 Schrenkiella parvula HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 32.8
THA.LOC104810094 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 3.7e-07 58.5 85 37.6
THA.LOC104810097 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 3.7e-07 58.5 85 37.6
TWI73G0316 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 3.7e-07 58.5 118 29.7
TAR636G2882 Trochodendron aralioides HOM05D000553 ORTHO05D000460 3.7e-07 58.5 119 31.1
Gohir.A13G015800 Gossypium hirsutum HOM05D000553 ORTHO05D000460 4.8e-07 58.2 119 31.9
QL07p035830 Quercus lobata HOM05D000553 ORTHO05D000460 4.8e-07 58.2 116 31.0
Thecc.05G017400 Theobroma cacao HOM05D000553 ORTHO05D000460 4.8e-07 58.2 120 31.7
Cfa017215 Carpinus fangiana HOM05D000553 ORTHO05D000460 6.3e-07 57.8 118 30.5
CiPaw.02G191700 Carya illinoinensis HOM05D000553 ORTHO05D000460 6.3e-07 57.8 119 31.1
SalBow6G4828 Salvia bowleyana HOM05D000553 ORTHO05D000460 6.3e-07 57.8 119 32.8
Sp3g07410 Schrenkiella parvula HOM05D000553 ORTHO05D000460 6.3e-07 57.8 117 31.6
Thecc.10G020500 Theobroma cacao HOM05D000553 ORTHO05D000460 6.3e-07 57.8 118 31.4
TPR.G2519 Trifolium pratense HOM05D000553 ORTHO05D000460 6.3e-07 57.8 119 31.1
Aa31LG10G10850 Aethionema arabicum HOM05D000553 ORTHO05D000460 8.3e-07 57.4 85 34.1
Duzib106G0047 Durio zibethinus HOM05D000553 ORTHO05D000460 8.3e-07 57.4 118 33.1
Lsat_1_v5_gn_9_33821 Lactuca sativa HOM05D000553 ORTHO05D000460 8.3e-07 57.4 116 31.0
PSO339G0673 Papaver somniferum HOM05D000553 ORTHO05D000460 8.3e-07 57.4 116 31.0
Sp5g06610 Schrenkiella parvula HOM05D000553 ORTHO05D000460 8.3e-07 57.4 123 31.7
arahy.Tifrunner.gnm1.ann1.F9T2J1 Arachis hypogaea HOM05D000553 ORTHO05D000460 1.1e-06 57.0 85 36.5
BcaC02g07353 Brassica carinata HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.1
A04p30060 Brassica napus HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.1
C04p67790 Brassica napus HOM05D000553 ORTHO05D003668 1.1e-06 57.0 119 31.1
BolC4t28283H Brassica oleracea HOM05D000553 ORTHO05D003668 1.1e-06 57.0 119 31.1
BraA04t18500Z Brassica rapa HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.1
CiPaw.09G208400 Carya illinoinensis HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.9
Ciclev10013102m.g Citrus clementina HOM05D000553 ORTHO05D000460 1.1e-06 57.0 116 31.9
Cc06_g17350 Coffea canephora HOM05D000553 ORTHO05D000460 1.1e-06 57.0 118 29.7
Dinv17982 Davidia involucrata HOM05D000553 ORTHO05D000460 1.1e-06 57.0 118 30.5
Dinv34394 Davidia involucrata HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.1
Duzib106G1055 Durio zibethinus HOM05D000553 ORTHO05D000460 1.1e-06 57.0 119 31.1
Gorai.012G076700 Gossypium raimondii HOM05D000553 ORTHO05D000460 1.1e-06 57.0 118 30.5
Manes.10G013800 Manihot esculenta HOM05D000553 ORTHO05D000460 1.1e-06 57.0 118 32.2
AT3G08990 Arabidopsis thaliana HOM05D000553 ORTHO05D000460 1.4e-06 56.6 117 32.5
MSTRG.10224 Avicennia marina HOM05D000553 ORTHO05D000460 1.4e-06 56.6 119 30.3
CSS0046582 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 1.4e-06 56.6 118 31.4
Migut.L02006 Erythranthe guttata HOM05D000553 ORTHO05D000460 1.4e-06 56.6 118 33.9
HanXRQChr10g0293791 Helianthus annuus HOM05D000553 ORTHO05D000460 1.4e-06 56.6 116 31.0
Rhsim03G0142200 Rhododendron simsii HOM05D000553 ORTHO05D000460 1.4e-06 56.6 85 37.6
Sed0019405 Sechium edule HOM05D000553 ORTHO05D000460 1.4e-06 56.6 118 29.7
Aa31LG5G18960 Aethionema arabicum HOM05D000553 ORTHO05D000460 1.8e-06 56.2 85 35.3
Sc11g0005000 Simmondsia chinensis HOM05D000553 ORTHO05D000460 1.8e-06 56.2 85 35.3
GSVIVG01032842001 Vitis vinifera HOM05D000553 ORTHO05D000460 1.8e-06 56.2 119 29.4
Atru.chr12.20 Acer truncatum HOM05D000553 ORTHO05D000460 2.4e-06 55.8 119 30.3
Manes.08G091500 Manihot esculenta HOM05D000553 ORTHO05D000460 2.4e-06 55.8 118 31.4
Peaxi162Scf00825g00027 Petunia axillaris HOM05D000553 ORTHO05D000460 2.4e-06 55.8 119 31.1
Hund09174 Selenicereus undatus HOM05D000553 ORTHO05D000460 2.4e-06 55.8 119 29.4
AL4G37760 Arabidopsis lyrata HOM05D000553 ORTHO05D000460 3.1e-06 55.5 119 30.3
arahy.Tifrunner.gnm1.ann1.DT1206 Arachis hypogaea HOM05D000553 ORTHO05D000460 3.1e-06 55.5 119 30.3
Carub.0004s2228 Capsella rubella HOM05D000553 ORTHO05D000460 3.1e-06 55.5 119 30.3
Gorai.013G018700 Gossypium raimondii HOM05D000553 ORTHO05D000460 3.1e-06 55.5 85 34.1
Actinidia20728 Actinidia chinensis HOM05D000553 ORTHO05D000460 4.1e-06 55.1 122 32.0
Aa31LG5G19490 Aethionema arabicum HOM05D000553 ORTHO05D000460 4.1e-06 55.1 119 30.3
arahy.Tifrunner.gnm1.ann1.2SI9Y9 Arachis hypogaea HOM05D000553 ORTHO05D000460 4.1e-06 55.1 119 30.3
MD01G1132600 Malus domestica HOM05D000553 ORTHO05D000460 4.1e-06 55.1 85 34.1
Solyc09g014500.3 Solanum lycopersicum HOM05D000553 ORTHO05D000460 4.1e-06 55.1 120 33.3
Sopen09g007330 Solanum pennellii HOM05D000553 ORTHO05D000460 4.1e-06 55.1 120 33.3
Aqoxy2G00922 Aquilegia oxysepala HOM05D000553 ORTHO05D000460 5.4e-06 54.7 118 31.4
AT2G40110 Arabidopsis thaliana HOM05D000553 ORTHO05D000460 5.4e-06 54.7 93 33.3
CARHR135080 Cardamine hirsuta HOM05D000553 ORTHO05D000460 5.4e-06 54.7 119 30.3
Nitab4.5_0000335g0200 Nicotiana tabacum HOM05D000553 ORTHO05D000460 5.4e-06 54.7 85 36.5
THA.LOC104826855 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 5.4e-06 54.7 119 27.7
HPP92_015496 Vanilla planifolia HOM05D000553 ORTHO05D000460 5.4e-06 54.7 118 28.0
Actinidia13931 Actinidia chinensis HOM05D000553 ORTHO05D000460 7.0e-06 54.3 85 35.3
MSTRG.210 Avicennia marina HOM05D000553 ORTHO05D000460 7.0e-06 54.3 119 31.1
BcaC05g29633 Brassica carinata HOM05D000553 ORTHO05D000460 7.0e-06 54.3 117 29.9
DCAR_011805 Daucus carota HOM05D000553 ORTHO05D000460 7.0e-06 54.3 119 30.3
FAN09G0351 Fragaria x ananassa HOM05D000553 ORTHO05D000460 7.0e-06 54.3 117 29.9
Hma1.2p1_0446F.1_g154560 Hydrangea macrophylla HOM05D000553 ORTHO05D000460 7.0e-06 54.3 118 29.7
Oeu033600.1 Olea europaea HOM05D000553 ORTHO05D000460 7.0e-06 54.3 117 29.9
Oeu064507.1 Olea europaea HOM05D000553 ORTHO05D000460 7.0e-06 54.3 118 32.2
Peaxi162Scf01208g00149 Petunia axillaris HOM05D000553 ORTHO05D000460 7.0e-06 54.3 118 30.5
PGSC0003DMG400019124 Solanum tuberosum HOM05D000553 ORTHO05D000460 7.0e-06 54.3 128 31.2
CDE02G4112 Ceratophyllum demersum HOM05D000553 ORTHO05D000460 9.1e-06 53.9 119 31.1
MELO3C003239.2 Cucumis melo HOM05D000553 ORTHO05D000460 9.1e-06 53.9 118 33.1
Migut.F00676 Erythranthe guttata HOM05D000553 ORTHO05D000460 9.1e-06 53.9 117 29.1
Thhalv10017415m.g Eutrema salsugineum HOM05D000553 ORTHO05D000460 9.1e-06 53.9 117 30.8
FvH4_6g11560 Fragaria vesca HOM05D000553 ORTHO05D000460 9.1e-06 53.9 117 29.9
FAN14G3942 Fragaria x ananassa HOM05D000553 ORTHO05D000460 9.1e-06 53.9 117 29.9
Hma1.2p1_0203F.1_g086620 Hydrangea macrophylla HOM05D000553 ORTHO05D000460 9.1e-06 53.9 118 31.4
Medtr7g068250 Medicago truncatula HOM05D000553 ORTHO05D000460 9.1e-06 53.9 117 29.9
TAR636G2175 Trochodendron aralioides HOM05D000553 ORTHO05D000460 9.1e-06 53.9 85 34.1
Zm00001eb053850 Zea mays HOM05D000553 ORTHO05D000460 9.1e-06 53.9 116 31.0


User provided reference genes

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