Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 0.0e+00 1570.1 805 100.0
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 0.0e+00 1542.7 805 98.0
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 0.0e+00 1536.5 805 97.6
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 0.0e+00 1425.2 813 90.2
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 0.0e+00 1412.9 837 87.6
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 0.0e+00 1388.6 810 86.9
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 4.0e-305 1051.2 825 69.1
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 1.1e-294 1016.5 820 68.8
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 1.6e-277 959.5 834 63.3
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 3.0e-268 928.7 848 61.3
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 3.2e-254 882.1 838 59.1
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 1.7e-239 833.2 814 57.7
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 2.4e-185 653.3 1001 43.1
AT3G28880 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 4.8e-157 559.3 562 55.3
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 9.8e-134 481.9 1023 33.9
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 3.7e-133 479.9 1032 33.4
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 1.8e-132 477.6 424 62.5
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 7.7e-131 472.2 1026 32.7
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 8.6e-130 468.8 1002 33.4
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 1.9e-129 467.6 1002 33.4
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 4.2e-129 466.5 1015 33.0
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 2.8e-128 463.8 1041 33.4
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 6.3e-125 452.6 1014 32.2
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 1.8e-124 451.1 1050 32.8
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 7.0e-124 449.1 1033 34.6
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 2.7e-123 447.2 1014 32.7
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 2.3e-122 444.1 1014 32.5
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 1.0e-119 435.3 1028 33.9
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 6.4e-117 426.0 1026 32.6
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.8e-112 410.6 1034 32.6
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 1.2e-110 405.2 1033 32.3
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 7.5e-110 402.5 1044 32.1
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 8.3e-109 399.1 1030 32.6
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 7.8e-107 392.5 1056 31.8
CANSAT64G0327 Cannabis sativa HOM05D007472 ORTHO05D009477 2.3e-103 380.9 860 32.3
BolC8t51634H Brassica oleracea HOM05D007472 ORTHO05D009477 3.1e-103 380.6 246 85.4
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 8.9e-103 379.0 1057 30.1
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 4.4e-102 376.7 1062 29.1
Atru.chr8.142 Acer truncatum HOM05D007472 ORTHO05D009477 4.9e-101 373.2 921 30.7
BcaC02g10318 Brassica carinata HOM05D001675 ORTHO05D001808 4.6e-99 366.7 246 82.1
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 1.9e-97 361.3 1050 28.8
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 2.1e-96 357.8 955 30.3
GSVIVG01011394001 Vitis vinifera HOM05D007472 ORTHO05D009477 3.9e-90 337.0 808 32.4
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 5.6e-89 333.2 442 45.9
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 8.1e-88 329.3 694 34.6
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 5.2e-87 326.6 439 44.4
CiPaw.03G027700 Carya illinoinensis HOM05D007472 ORTHO05D009477 4.4e-86 323.6 796 31.4
Duzib147G0661 Durio zibethinus HOM05D007472 ORTHO05D009477 3.9e-82 310.5 895 30.1
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 1.9e-81 308.1 1056 27.4
FAN14G2920 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.1e-80 304.7 714 33.3
Aqoxy1G01920 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 9.0e-79 299.3 1015 27.9
AUR62034398 Chenopodium quinoa HOM05D007472 ORTHO05D009477 2.1e-75 288.1 891 28.5
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 3.0e-74 284.3 523 38.4
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 5.3e-71 273.5 418 41.6
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 9.0e-71 272.7 746 30.6
Aqoxy1G01781 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 4.6e-67 260.4 832 29.0
Cpa.g.sc1057.1 Carica papaya HOM05D007472 ORTHO05D009477 8.2e-64 249.6 727 29.0
C08p40690 Brassica napus HOM05D007472 ORTHO05D009477 4.0e-63 247.3 157 84.1
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 3.5e-59 234.2 443 36.3
BcaC07g41068 Brassica carinata HOM05D007472 ORTHO05D009477 1.1e-57 229.2 158 79.1
TAR622G0195 Trochodendron aralioides HOM05D007472 ORTHO05D009477 8.5e-45 186.4 348 34.5
AT3G28875 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 1.1e-41 176.0 133 64.7
Os12g0587100 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 2.6e-38 164.9 413 31.5
RcHm_v2.0_Chr2g0170061 Rosa chinensis HOM05D007472 ORTHO05D009477 3.8e-37 161.0 286 40.2
Hund13216 Selenicereus undatus HOM05D007472 ORTHO05D009477 1.1e-36 159.5 130 60.8
Nn3g17438 Nelumbo nucifera HOM05D007472 ORTHO05D009477 2.5e-36 158.3 322 32.3
FAN14G0482 Fragaria x ananassa HOM05D007472 ORTHO05D009477 4.2e-36 157.5 303 40.3
EL10Ac1g01538 Beta vulgaris HOM05D007472 ORTHO05D009477 1.4e-34 152.5 135 54.8
CDE04G1619 Ceratophyllum demersum HOM05D007472 ORTHO05D009477 2.8e-32 144.8 709 24.4
RcHm_v2.0_Chr6g0246231 Rosa chinensis HOM05D007472 ORTHO05D009477 9.1e-31 139.8 182 42.3
CBR_g32589 Chara braunii HOM05D007472 ORTHO05D009477 3.3e-25 121.3 503 26.0
Mapoly0003s0158 Marchantia polymorpha HOM05D007472 ORTHO05D009477 5.7e-25 120.6 513 24.4
Pp3c11_18760 Physcomitrium patens HOM05D007472 ORTHO05D009477 4.1e-23 114.4 235 33.2
Pp3c7_7390 Physcomitrium patens HOM05D007472 ORTHO05D009477 4.1e-23 114.4 171 38.0
SEGI_35223 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 5.3e-23 114.0 156 40.4
SMO117G0184 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 4.5e-22 110.9 483 26.1
BolC4t24572H Brassica oleracea HOM05D007472 ORTHO05D009477 9.4e-20 103.2 85 70.6
Mapoly0010s0146 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.7e-19 101.7 135 42.2
SMO244G0018 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 3.6e-19 101.3 146 38.4
Mapoly0010s0140 Marchantia polymorpha HOM05D007472 ORTHO05D009477 1.4e-18 99.4 135 41.5
EL10Ac2g03267 Beta vulgaris HOM05D007472 ORTHO05D009477 1.8e-18 99.0 86 55.8
Mapoly0213s0013 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.3e-18 98.6 165 38.2
Mapoly0163s0008 Marchantia polymorpha HOM05D007472 ORTHO05D009477 5.2e-18 97.4 232 31.9
RcHm_v2.0_Chr6g0246241 Rosa chinensis HOM05D007472 ORTHO05D009477 1.2e-17 96.3 129 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3065 Anthoceros agrestis HOM05D007472 ORTHO05D009477 2.0e-17 95.5 86 54.7
C08p40680 Brassica napus HOM05D007472 ORTHO05D009477 4.4e-17 94.4 46 97.8
Pp3c3_9890 Physcomitrium patens HOM05D007472 ORTHO05D009477 4.4e-17 94.4 84 58.3
SMO244G0049 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 1.7e-16 92.4 177 35.0
RcHm_v2.0_Chr2g0170071 Rosa chinensis HOM05D007472 ORTHO05D009477 1.2e-14 86.3 93 44.1
FvH4_6g49030 Fragaria vesca HOM05D007472 ORTHO05D009477 2.0e-14 85.5 324 26.5
CANSAT35G1746 Cannabis sativa HOM05D007472 ORTHO05D009477 2.3e-13 82.0 95 45.3
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 4.7e-11 74.3 193 31.6
Aqoxy1G01780 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 1.4e-10 72.8 160 31.9
AUR62034397 Chenopodium quinoa HOM05D007472 ORTHO05D009477 4.0e-10 71.2 103 40.8
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 5.2e-10 70.9 226 31.0
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 2.6e-09 68.6 202 32.2
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 3.7e-08 64.7 226 28.8
Rhsim06G0231700 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.0e-06 58.9 154 33.1
FAN09G4693 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.7e-06 58.5 91 36.3
Dinv25440 Davidia involucrata HOM05D008239 ORTHO05D009800 4.5e-06 57.8 243 26.3


User provided reference genes

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