Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 6.8e-239 830.5 489 100.0
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 5.8e-222 774.2 489 95.1
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 8.7e-186 654.1 542 78.0
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 1.9e-177 626.3 556 75.0
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 9.8e-137 491.1 260 97.3
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 7.9e-86 322.0 247 68.8
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.6e-81 307.0 245 64.5
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.9e-69 266.5 244 61.5
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 6.5e-64 249.2 245 57.1
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.9e-63 247.7 238 58.0
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 4.8e-59 233.0 131 84.7
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.0e-56 223.0 243 55.6
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 6.7e-53 212.6 240 51.2
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 6.7e-53 212.6 240 51.2
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 7.4e-52 209.1 240 49.6
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.8e-51 207.2 239 49.8
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.1e-50 205.3 274 46.7
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.4e-50 204.9 250 48.0
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.1e-50 203.4 264 46.2
C07p36490 Brassica napus HOM05D003110 ORTHO05D003585 3.8e-48 196.8 259 54.1
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 6.5e-48 196.1 250 46.8
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.2e-47 193.4 238 47.5
BolC7t44168H Brassica oleracea HOM05D003110 ORTHO05D003585 5.5e-47 193.0 254 59.4
BcaC06g30990 Brassica carinata HOM05D003110 ORTHO05D003585 6.7e-45 186.0 257 56.4
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.0e-44 184.5 250 47.2
Thhalv10004967m.g Eutrema salsugineum HOM05D006554 ORTHO05D017433 7.4e-44 182.6 232 54.3
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 2.4e-42 177.6 217 45.6
BcaC06g30994 Brassica carinata HOM05D006554 ORTHO05D017433 8.5e-40 169.1 159 64.8
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.8e-37 161.4 246 40.7
BcaC06g33820 Brassica carinata HOM05D006554 ORTHO05D017433 4.0e-37 160.2 145 64.8
BraA09t35980Z Brassica rapa HOM05D001287 ORTHO05D001226 7.5e-36 156.0 224 60.7
A06p41180 Brassica napus HOM05D003110 ORTHO05D003585 3.7e-35 153.7 262 50.8
BraA06t27041Z Brassica rapa HOM05D003110 ORTHO05D003585 3.7e-35 153.7 262 50.8
AT3G27415 Arabidopsis thaliana HOM05D006554 ORTHO05D017433 1.4e-34 151.8 229 51.5
BcaC06g30992 Brassica carinata HOM05D000131 ORTHO05D008778 7.0e-34 149.4 328 38.4
Carub.0005s0573 Capsella rubella HOM05D006554 ORTHO05D017433 1.2e-33 148.7 236 51.3
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 5.0e-32 143.3 153 48.4
A09p03420 Brassica napus HOM05D001287 ORTHO05D001226 4.0e-29 133.7 224 46.9
CARHR148760 Cardamine hirsuta HOM05D006554 ORTHO05D017433 1.4e-26 125.2 232 55.2
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 7.2e-23 112.8 257 32.3
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.8e-21 108.2 297 32.0
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 2.3e-21 107.8 254 33.9
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.3e-21 107.8 274 33.9
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 3.0e-21 107.5 293 30.4
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 4.0e-21 107.1 276 32.6
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 5.2e-21 106.7 264 31.1
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 2.0e-20 104.8 265 34.0
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 7.5e-20 102.8 232 34.5
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 9.8e-20 102.4 232 34.1
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 9.8e-20 102.4 261 33.0
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.3e-19 102.1 257 32.7
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 2.8e-19 100.9 223 34.1
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.9e-19 100.1 257 32.3
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 4.9e-19 100.1 322 29.8
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 4.9e-19 100.1 315 29.5
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 6.3e-19 99.8 223 35.4
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.3e-19 99.4 261 32.2
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 2.4e-18 97.8 228 32.9
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 2.4e-18 97.8 139 42.4
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.1e-18 97.4 282 30.5
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 4.1e-18 97.1 344 29.7
BcaB07g30159 Brassica carinata HOM05D003110 ORTHO05D003585 9.2e-18 95.9 108 60.2
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 9.2e-18 95.9 270 30.0
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 9.2e-18 95.9 302 29.5
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 9.2e-18 95.9 274 31.4
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 9.2e-18 95.9 277 30.3
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.2e-17 95.5 284 31.0
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.2e-17 95.5 284 31.0
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.2e-17 95.5 253 32.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 2.0e-17 94.7 132 43.9
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.5e-17 94.0 284 30.6
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 5.9e-17 93.2 298 30.5
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 7.8e-17 92.8 159 39.6
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.0e-16 92.4 123 44.7
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 1.0e-16 92.4 134 41.8
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.0e-16 92.4 287 28.2
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.3e-16 92.0 231 33.8
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 1.7e-16 91.7 143 39.2
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 1.7e-16 91.7 138 38.4
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 2.3e-16 91.3 202 32.7
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.3e-16 91.3 281 30.6
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.3e-16 91.3 221 31.7
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 6.6e-16 89.7 123 41.5
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 6.6e-16 89.7 222 29.7
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.1e-15 89.0 308 30.2
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.5e-15 88.6 141 39.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.9e-15 88.2 288 29.9
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.9e-15 88.2 130 44.6
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.9e-15 88.2 275 31.6
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 2.5e-15 87.8 102 45.1
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 2.5e-15 87.8 277 28.9
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 2.5e-15 87.8 312 27.6
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.0e-13 82.4 216 30.6
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.0e-13 82.4 290 29.7
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.8e-13 81.6 179 29.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 6.8e-13 79.7 320 29.4
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.5e-12 78.6 140 35.0
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.5e-12 78.6 128 36.7
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.5e-12 78.6 274 28.5
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.0e-12 78.2 124 39.5
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 5.7e-12 76.6 178 33.1
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 7.5e-12 76.3 137 35.8
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 9.8e-12 75.9 129 37.2
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.3e-11 75.5 147 33.3
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 8.3e-11 72.8 177 30.5
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 8.3e-11 72.8 181 33.1
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 1.1e-10 72.4 236 28.8
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.1e-10 72.4 122 37.7
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 1.8e-10 71.6 96 41.7
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 2.4e-10 71.2 106 36.8
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 3.2e-10 70.9 181 32.6
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 4.1e-10 70.5 137 35.8
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 4.1e-10 70.5 107 42.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 9.2e-10 69.3 72 48.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.0e-09 68.2 177 30.5
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.7e-09 67.8 214 25.7
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 5.0e-08 63.5 233 26.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 5.6e-07 60.1 115 37.4
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 8.0e-06 56.2 172 25.6


User provided reference genes

Program Settings