Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 2096.6 1078 100.0
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 2068.1 1080 98.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1992.2 1083 94.7
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1961.4 1090 92.8
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1902.1 1088 89.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1895.2 1090 88.3
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1890.2 1088 88.1
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1889.0 1088 88.8
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1887.1 1094 87.8
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1887.1 1094 87.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1886.3 1095 87.5
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1868.6 1081 88.3
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1866.3 1088 87.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1839.3 1086 86.7
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1836.2 1087 87.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1796.9 1088 85.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1751.9 1121 81.1
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1630.5 1103 75.1
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1341.6 1106 63.1
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1111 62.6
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1332.4 1117 62.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1329.3 1102 64.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1328.9 1079 63.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1326.2 1116 61.9
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1105 63.0
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1317.4 1105 62.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1101 62.6
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1308.9 1105 61.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1118 61.4
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1307.4 1101 62.6
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1120 61.9
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1295.4 1120 61.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1291.9 1114 60.5
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1288.1 1128 61.4
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1283.9 1060 63.7
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1278.1 1175 57.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1271.5 1113 60.3
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1120 60.0
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1260.7 1114 58.8
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 1108 59.1
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 1120 59.3
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1258.8 1108 59.6
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 1113 58.8
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1113 58.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1253.8 1099 59.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1111 59.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1109 59.1
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 1108 59.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1251.5 1123 58.2
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1109 58.9
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1250.7 1128 58.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1248.8 1113 58.4
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1248.8 1114 59.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1247.3 1100 59.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1246.5 1082 59.7
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1244.2 1099 59.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1115 58.3
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1101 59.2
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 1111 59.0
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1239.6 1175 56.8
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 1099 59.1
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1237.2 1109 58.3
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1134 58.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1234.9 1113 58.1
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1117 58.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1233.4 1110 58.1
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 1135 58.8
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1226.5 1106 58.0
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1226.5 1115 57.7
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1216.4 1140 57.7
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1214.5 1120 57.4
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1208.4 1097 57.6
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1208.0 1090 57.7
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1206.4 1102 57.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1204.5 1107 58.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 1100 57.0
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1118 56.1
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 1115 56.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1191.4 1097 57.9
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1188.3 1087 57.2
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1181.0 1197 53.5
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1179.9 1117 55.8
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1179.5 1117 55.9
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1178.7 1120 56.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1176.4 1091 57.9
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1175.2 1094 56.9
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1169.5 1134 54.9
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1164.4 1097 56.3
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1160.6 1149 53.4
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1152.9 916 64.6
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1152.5 992 61.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1141.3 1111 54.4
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1127.1 984 60.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1110.5 953 60.9
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1106.3 1090 53.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1092.8 950 60.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1087.8 1149 52.3
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1087.4 1190 50.8
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1085.9 794 68.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1083.2 936 61.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 2.2e-311 1072.4 1004 55.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.9e-310 1069.3 841 64.1
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.3e-306 1056.6 959 57.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.3e-303 1045.8 1118 51.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.5e-296 1021.9 1091 52.0
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 8.4e-290 1000.7 731 67.9
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 6.0e-280 968.0 890 57.5
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 5.3e-276 954.9 1128 47.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.0e-267 926.4 1023 51.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.3e-262 908.7 1100 46.5
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 8.7e-255 884.4 644 69.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.4e-247 860.5 1006 47.5
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.7e-247 858.2 1126 44.8
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.2e-233 812.8 1073 43.2
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.3e-231 806.6 798 55.3
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.8e-215 753.8 811 49.7
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-186 657.9 961 41.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.0e-166 590.9 1087 36.3
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 3.2e-148 530.4 1108 34.3
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.0e-147 526.2 404 66.3
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.3e-146 525.0 448 59.4
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.9e-139 499.2 536 52.4
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.1e-115 421.4 329 61.7
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 7.2e-100 369.8 330 56.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.2e-97 362.5 1185 26.8
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.9e-87 328.6 247 72.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.4e-87 328.2 247 72.9
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.6e-83 315.5 247 71.7
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 3.4e-81 307.8 505 39.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.1e-75 288.5 231 65.4
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.7e-59 234.2 391 40.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.9e-57 226.5 246 50.8
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-55 223.0 244 52.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.4e-49 201.4 201 55.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.4e-48 196.8 215 51.6
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-44 186.4 223 45.7
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-44 186.4 223 45.7
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-44 186.4 223 45.7
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.3e-44 184.5 223 45.3
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.6e-44 184.1 359 35.4
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.6e-44 183.3 223 45.3
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.8e-43 181.8 230 46.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.1e-39 169.9 378 33.3
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.6e-36 156.8 229 42.8
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-33 149.8 223 40.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.9e-32 145.2 161 48.4
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 9.3e-31 140.2 143 51.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.1e-28 133.3 370 28.6
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 9.4e-23 113.6 99 62.6
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.2e-19 102.4 79 63.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.7e-19 101.7 240 32.1
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.3e-19 100.9 124 46.0
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.4e-18 99.0 302 29.1
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 5.0e-16 91.3 76 57.9
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 6.5e-16 90.9 58 65.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.7e-11 75.1 72 51.4
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 8.2e-11 73.9 99 44.4


User provided reference genes

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