Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 6.4e-224 780.4 387 100.0
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 6.4e-224 780.4 387 100.0
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 6.6e-205 717.2 387 93.5
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 4.9e-115 418.7 410 60.0
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 3.8e-91 339.3 400 49.5
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 1.6e-89 334.0 410 47.3
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 1.9e-87 327.0 393 49.9
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 2.4e-85 320.1 414 47.6
A01p10480 Brassica napus HOM05D007309 ORTHO05D010099 4.0e-85 319.3 399 48.6
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 2.0e-84 317.0 393 46.1
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 3.5e-81 306.2 400 46.0
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 8.7e-80 301.6 396 45.7
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 3.3e-79 299.7 396 45.7
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 3.7e-78 296.2 390 46.2
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 1.8e-77 293.9 401 45.4
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-76 290.4 401 45.4
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-76 289.3 393 43.8
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 7.6e-76 288.5 393 43.8
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 8.7e-72 275.0 393 44.5
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-68 262.7 386 43.3
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-68 262.7 420 41.2
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 2.5e-66 256.9 398 43.0
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-66 256.9 399 43.1
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 3.2e-66 256.5 388 39.7
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 4.6e-65 252.7 388 42.5
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 7.9e-65 251.9 388 38.7
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 3.0e-64 250.0 388 42.5
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 2.5e-63 246.9 377 38.5
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 4.3e-63 246.1 370 42.7
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 7.4e-63 245.4 378 38.6
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 1.3e-62 244.6 383 38.4
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 4.8e-62 242.7 387 40.6
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 8.2e-62 241.9 403 40.9
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 2.4e-61 240.4 380 37.6
BcaC03g12955 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-61 240.0 352 43.2
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 4.5e-60 236.1 377 41.6
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 8.5e-59 231.9 364 37.9
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 4.2e-58 229.6 372 36.8
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 1.2e-57 228.0 402 40.3
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 2.1e-57 227.3 317 46.1
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 3.7e-54 216.5 383 38.6
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 1.5e-52 211.1 387 39.3
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.7e-51 207.6 371 37.7
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 6.5e-51 205.7 386 39.9
BolC2t06134H Brassica oleracea HOM05D007309 ORTHO05D010099 1.1e-50 204.9 324 42.3
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 6.3e-46 189.1 326 41.1
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 8.2e-46 188.7 171 57.3
C02p01460 Brassica napus HOM05D007309 ORTHO05D010099 1.1e-45 188.3 174 56.9
C02p01200 Brassica napus HOM05D007309 ORTHO05D010099 1.4e-45 188.0 171 57.3
BcaB05g21793 Brassica carinata HOM05D007309 ORTHO05D010099 2.2e-43 180.6 149 61.7
BolC1t01104H Brassica oleracea HOM05D007309 ORTHO05D010099 8.5e-43 178.7 263 44.1
BcaC06g31633 Brassica carinata HOM05D007309 ORTHO05D010099 2.6e-39 167.2 229 40.6
BolC1t01103H Brassica oleracea HOM05D007309 ORTHO05D010099 3.3e-39 166.8 136 61.8
C01p11350 Brassica napus HOM05D007309 ORTHO05D010099 3.1e-37 160.2 263 41.1
BcaC03g12971 Brassica carinata HOM05D007309 ORTHO05D010099 3.8e-35 153.3 382 29.8
BolC2t06143H Brassica oleracea HOM05D007309 ORTHO05D010099 5.0e-35 152.9 140 54.3
C03p38220 Brassica napus HOM05D007309 ORTHO05D032970 5.5e-34 149.4 105 76.2
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 7.2e-34 149.1 274 34.7
BolC3t16103H Brassica oleracea HOM05D007309 ORTHO05D032970 1.2e-31 141.7 114 68.4
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-29 133.7 379 28.5
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 5.9e-28 129.4 165 40.6
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 1.0e-27 128.6 379 30.3
AL4G19130 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.3e-27 128.3 163 40.5
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 3.8e-27 126.7 379 30.1
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 1.9e-26 124.4 170 38.8
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.5e-26 124.0 317 32.5
BolC2t06128H Brassica oleracea HOM05D007309 ORTHO05D010099 4.2e-26 123.2 285 32.3
BcaC01g05143 Brassica carinata HOM05D007309 ORTHO05D031751 3.6e-25 120.2 179 41.3
BcaC01g06784 Brassica carinata HOM05D007309 ORTHO05D032970 1.8e-24 117.9 80 73.8
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 8.8e-24 115.5 368 30.4
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 2.4e-21 107.5 404 27.0
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 3.1e-21 107.1 164 39.6
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 1.2e-20 105.1 236 35.6
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 1.1e-18 98.6 81 55.6
BraA01t00917Z Brassica rapa HOM05D007309 ORTHO05D027345 1.5e-18 98.2 117 48.7
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 2.5e-18 97.4 168 35.1
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 4.2e-18 96.7 167 33.5
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 7.2e-18 95.9 167 33.5
A01p09740 Brassica napus HOM05D007309 ORTHO05D027345 2.8e-17 94.0 113 47.8
BcaC09g51620 Brassica carinata HOM05D007309 ORTHO05D027345 1.0e-16 92.0 97 52.6
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 4.0e-16 90.1 174 36.8
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 5.2e-16 89.7 320 28.8
C02p01690 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-15 88.2 134 38.8
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 2.0e-15 87.8 155 38.7
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 9.8e-15 85.5 174 36.8
BcaNung05912 Brassica carinata HOM05D007309 ORTHO05D010099 2.8e-14 84.0 73 54.8
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 6.3e-14 82.8 174 35.6
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 7.0e-13 79.3 176 30.7
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 9.2e-13 79.0 369 25.7
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 5.9e-12 76.3 359 24.5
A05p24100 Brassica napus HOM05D000075 ORTHO05D014840 1.3e-11 75.1 175 32.6
BraA05t21290Z Brassica rapa HOM05D000075 ORTHO05D014840 1.3e-11 75.1 175 32.6
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 1.7e-11 74.7 136 36.0
Thhalv10014870m.g Eutrema salsugineum HOM05D007309 ORTHO05D014840 3.9e-11 73.6 142 36.6
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 5.0e-11 73.2 178 33.7
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 1.5e-10 71.6 76 47.4
A04p22450 Brassica napus HOM05D000075 ORTHO05D014840 2.5e-10 70.9 178 28.7
C02p01410 Brassica napus HOM05D007309 ORTHO05D010099 3.3e-10 70.5 76 50.0
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 6.1e-09 66.2 137 32.8
BcaB05g21782 Brassica carinata HOM05D007309 ORTHO05D010099 1.0e-08 65.5 56 58.9
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 1.8e-08 64.7 120 32.5
C06p00010 Brassica napus HOM05D014685 ORTHO05D011865 2.3e-08 64.3 127 32.3
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 2.3e-08 64.3 138 30.4
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 3.1e-08 63.9 137 32.1
C03p25280 Brassica napus HOM05D014685 ORTHO05D011865 5.2e-08 63.2 114 32.5
BolC3t14922H Brassica oleracea HOM05D014685 ORTHO05D011865 5.2e-08 63.2 114 32.5
AL5G44670 Arabidopsis lyrata HOM05D021205 ORTHO05D018443 6.8e-08 62.8 150 29.3
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 8.9e-08 62.4 156 25.0
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 2.6e-07 60.8 135 28.9
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 2.6e-07 60.8 135 28.9
BraA01t03637Z Brassica rapa HOM05D012545 ORTHO05D013730 2.6e-07 60.8 163 29.4
BraA03t11376Z Brassica rapa HOM05D014685 ORTHO05D011865 4.4e-07 60.1 103 31.1
A03p21410 Brassica napus HOM05D014187 ORTHO05D011865 5.8e-07 59.7 98 31.6
Thhalv10015133m.g Eutrema salsugineum HOM05D012545 ORTHO05D011781 1.3e-06 58.5 91 34.1
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.2e-06 57.8 146 29.5
BolC2t06137H Brassica oleracea HOM05D041431 ORTHO05D033677 2.2e-06 57.8 45 60.0
AT2G19890 Arabidopsis thaliana HOM05D010965 ORTHO05D081396 3.7e-06 57.0 86 36.0
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 4.9e-06 56.6 127 32.3
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 6.4e-06 56.2 134 28.4


User provided reference genes

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