Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17361 Brassica carinata HOM05D037364 ORTHO05D019940 9.6e-52 206.5 98 100.0
C02p53000 Brassica napus HOM05D037364 ORTHO05D019940 9.6e-52 206.5 98 100.0
BolC2t11369H Brassica oleracea HOM05D037364 ORTHO05D019940 9.6e-52 206.5 98 100.0
BraA09t39555Z Brassica rapa HOM05D000005 ORTHO05D000012 1.3e-27 126.3 134 53.0
A09p40590 Brassica napus HOM05D000005 ORTHO05D000012 2.2e-27 125.6 134 53.0
C05p23530 Brassica napus HOM05D000005 ORTHO05D000012 4.8e-27 124.4 132 52.3
BolC5t31066H Brassica oleracea HOM05D000005 ORTHO05D000012 4.1e-26 121.3 140 49.3
C02p53030 Brassica napus HOM05D000005 ORTHO05D019940 1.6e-22 109.4 53 92.5
BcaC05g26337 Brassica carinata HOM05D000005 ORTHO05D000012 2.0e-20 102.4 182 38.5
BcaC02g07539 Brassica carinata HOM05D000005 ORTHO05D019940 5.7e-20 100.9 53 81.1
AL1G38300 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.2e-17 93.2 135 42.2
BcaC07g39246 Brassica carinata HOM05D000005 ORTHO05D000012 1.2e-17 93.2 111 47.7
Sp1g21610 Schrenkiella parvula HOM05D000005 ORTHO05D019940 1.2e-17 93.2 53 79.2
AT1G27170 Arabidopsis thaliana HOM05D000005 ORTHO05D000012 1.0e-16 90.1 136 41.2
Carub.0001s2379 Capsella rubella HOM05D000005 ORTHO05D000294 2.9e-16 88.6 136 40.4
C08p22520 Brassica napus HOM05D000005 ORTHO05D000012 6.5e-16 87.4 53 71.7
THA.LOC104822077 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 1.2e-14 83.2 58 69.0
Sp1g21600 Schrenkiella parvula HOM05D000005 ORTHO05D000012 2.3e-13 79.0 60 63.3
AL1G38285 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 3.0e-13 78.6 137 39.4
BcaB05g22226 Brassica carinata HOM05D000005 ORTHO05D000012 3.0e-13 78.6 61 63.9
BcaB07g32393 Brassica carinata HOM05D000005 ORTHO05D000012 4.0e-13 78.2 61 63.9
CARHR024680 Cardamine hirsuta HOM05D000005 ORTHO05D000012 8.8e-13 77.0 60 61.7
BolC8t49886H Brassica oleracea HOM05D000005 ORTHO05D000012 1.2e-12 76.6 54 64.8
Carub.0001s2378 Capsella rubella HOM05D000005 ORTHO05D000012 2.6e-12 75.5 61 60.7
Sp1g21590 Schrenkiella parvula HOM05D000005 ORTHO05D000012 3.4e-12 75.1 60 60.0
BcaB03g11975 Brassica carinata HOM05D000005 ORTHO05D000012 5.7e-12 74.3 61 63.9
BcaC02g07540 Brassica carinata HOM05D000005 ORTHO05D000012 5.7e-12 74.3 61 60.7
BraA09t39556Z Brassica rapa HOM05D000005 ORTHO05D000012 2.2e-11 72.4 60 56.7
BcaB07g32394 Brassica carinata HOM05D000005 ORTHO05D000012 2.8e-11 72.0 59 62.7
CARHR024660 Cardamine hirsuta HOM05D000005 ORTHO05D000012 2.8e-11 72.0 60 56.7
Aa31LG7G8010 Aethionema arabicum HOM05D000005 ORTHO05D000012 3.7e-11 71.6 120 39.2
Thhalv10006573m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 3.7e-11 71.6 60 66.7
BcaB03g11973 Brassica carinata HOM05D000005 ORTHO05D000012 6.3e-11 70.9 62 59.7
AT1G27180 Arabidopsis thaliana HOM05D000005 ORTHO05D000012 1.8e-10 69.3 140 36.4
A09p40600 Brassica napus HOM05D000005 ORTHO05D000012 2.4e-10 68.9 59 57.6
Thhalv10023218m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 5.4e-10 67.8 97 40.2
C05p23460 Brassica napus HOM05D000005 ORTHO05D000012 9.1e-10 67.0 52 61.5
BolC5t31058H Brassica oleracea HOM05D000005 ORTHO05D000012 9.1e-10 67.0 52 61.5
BolC1t03019H Brassica oleracea HOM05D000005 ORTHO05D039928 1.2e-09 66.6 37 78.4
Potri.012G053200 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.2e-09 66.6 61 55.7
BraA08t34712Z Brassica rapa HOM05D000005 ORTHO05D000012 2.7e-09 65.5 60 53.3
Sabra12G0037200 Salix brachista HOM05D000005 ORTHO05D000012 3.5e-09 65.1 61 54.1
Gorai.005G188600 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.9e-09 64.3 54 53.7
COL.COLO4_36248 Corchorus olitorius HOM05D000005 ORTHO05D000294 7.7e-09 63.9 59 54.2
AL1G38290 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.0e-08 63.5 60 55.0
A08p27810 Brassica napus HOM05D000005 ORTHO05D000012 1.0e-08 63.5 60 51.7
Gohir.A03G144800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.0e-08 63.5 60 48.3
Glyma.08G293600 Glycine max HOM05D000005 ORTHO05D000012 1.3e-08 63.2 54 55.6
Potri.015G043600 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.3e-08 63.2 61 54.1
Sabra15G0041700 Salix brachista HOM05D000005 ORTHO05D000012 1.3e-08 63.2 61 52.5
AL1G38310 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.7e-08 62.8 99 40.4
Manes.05G094300 Manihot esculenta HOM05D000005 ORTHO05D000012 1.7e-08 62.8 61 55.7
Thecc.02G237000 Theobroma cacao HOM05D000005 ORTHO05D000012 1.7e-08 62.8 59 54.2
Potri.015G043501 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.9e-08 62.0 61 52.5
TWI36G0858 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 3.8e-08 61.6 56 51.8
Ciclev10030550m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.0e-08 61.2 136 33.1
Duzib268G1199 Durio zibethinus HOM05D000005 ORTHO05D000012 1.5e-07 59.7 60 50.0
VMungo1215G0566 Vigna mungo HOM05D000005 ORTHO05D000012 2.5e-07 58.9 54 53.7
Glyma.01G039000 Glycine max HOM05D000005 ORTHO05D000012 3.2e-07 58.5 56 53.6
Gorai.005G188500 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.2e-07 58.5 56 50.0
Lj2g0014979 Lotus japonicus HOM05D000005 ORTHO05D000012 3.2e-07 58.5 54 55.6
Phvul.003G072500 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 3.2e-07 58.5 58 51.7
TWI36G0972 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 3.2e-07 58.5 55 47.3
MELO3C022154.2 Cucumis melo HOM05D000005 ORTHO05D000012 5.5e-07 57.8 83 38.6
Phvul.010G054300 Phaseolus vulgaris HOM05D000005 ORTHO05D000294 5.5e-07 57.8 69 47.8
Lj2g0014428 Lotus japonicus HOM05D000005 ORTHO05D000012 7.2e-07 57.4 54 55.6
QL05p000986 Quercus lobata HOM05D000005 ORTHO05D000012 7.2e-07 57.4 68 44.1
Duzib268G0999 Durio zibethinus HOM05D000005 ORTHO05D000012 9.4e-07 57.0 60 48.3
Gohir.D02G168100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.4e-07 57.0 60 46.7
Glyma.06G264100 Glycine max HOM05D000005 ORTHO05D000294 1.2e-06 56.6 86 44.2
MD00G1011700 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-06 56.6 65 47.7
BcaC07g39242 Brassica carinata HOM05D000005 ORTHO05D000012 1.6e-06 56.2 44 54.5
BolC8t49881H Brassica oleracea HOM05D000005 ORTHO05D000012 1.6e-06 56.2 44 54.5
Phvul.002G079200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.6e-06 56.2 54 50.0
Phvul.010G054800 Phaseolus vulgaris HOM05D000005 ORTHO05D000294 1.6e-06 56.2 70 47.1
arahy.Tifrunner.gnm1.ann1.3D7DCX Arachis hypogaea HOM05D000005 ORTHO05D000012 2.1e-06 55.8 56 51.8
arahy.Tifrunner.gnm1.ann1.7121CT Arachis hypogaea HOM05D000005 ORTHO05D000012 2.1e-06 55.8 56 51.8
Glyma.06G260550 Glycine max HOM05D000005 ORTHO05D000294 2.1e-06 55.8 60 48.3
FAN04G1101 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.7e-06 55.5 70 40.0
FAN22G2050 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.7e-06 55.5 59 54.2
Gohir.D02G167900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.7e-06 55.5 54 48.1
Gorai.005G188300 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.7e-06 55.5 54 48.1
Lj3g0026526 Lotus japonicus HOM05D000005 ORTHO05D000012 2.7e-06 55.5 84 33.3
MD00G1027000 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-06 55.5 52 53.8
MD16G1082700 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-06 55.5 124 31.5
MD00G1026000 Malus domestica HOM05D000005 ORTHO05D000294 3.6e-06 55.1 52 53.8
QL03p067743 Quercus lobata HOM05D000005 ORTHO05D000012 3.6e-06 55.1 95 36.8
MD02G1038400 Malus domestica HOM05D000005 ORTHO05D000012 4.7e-06 54.7 85 38.8
CiPaw.05G143000 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.1e-06 54.3 83 37.3
MELO3C031443.2 Cucumis melo HOM05D000005 ORTHO05D000012 6.1e-06 54.3 68 45.6
MD02G1063800 Malus domestica HOM05D000005 ORTHO05D000012 6.1e-06 54.3 69 42.0
CsaV3_2G009690 Cucumis sativus L. HOM05D000005 ORTHO05D000012 8.0e-06 53.9 68 44.1
QL09p004130 Quercus lobata HOM05D000005 ORTHO05D000012 8.0e-06 53.9 54 44.4
Sed0023849 Sechium edule HOM05D000005 ORTHO05D000012 8.0e-06 53.9 70 40.0
PGSC0003DMG400026433 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.0e-06 53.9 88 34.1


User provided reference genes

Program Settings