Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 4.7e-174 614.4 303 100.0
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 4.7e-174 614.4 303 100.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.6e-169 599.4 326 92.6
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.6e-169 599.4 326 92.6
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.5e-167 592.8 332 91.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 4.3e-167 591.3 324 92.0
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 3.4e-164 581.6 326 89.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 3.4e-164 581.6 326 89.3
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 9.9e-164 580.1 326 89.6
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 2.4e-162 575.5 326 88.7
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 4.2e-162 574.7 326 89.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 5.4e-162 574.3 326 88.3
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 7.1e-162 573.9 326 87.7
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 2.1e-161 572.4 328 88.7
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.8e-160 569.3 327 87.8
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.8e-160 569.3 327 87.8
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.8e-160 569.3 327 87.8
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 8.7e-160 567.0 326 87.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 3.3e-159 565.1 327 87.8
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 7.4e-159 563.9 327 87.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 2.8e-158 562.0 326 88.3
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 7.1e-154 547.4 326 84.4
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 3.9e-136 488.4 328 73.5
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 6.7e-136 487.6 326 75.5
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.1e-135 486.9 328 73.8
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 1.5e-135 486.5 326 74.2
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.5e-135 485.7 327 72.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 7.4e-135 484.2 328 73.2
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.2e-134 482.6 327 73.1
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.2e-134 482.6 327 73.1
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 6.3e-134 481.1 320 73.8
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-133 479.2 327 71.9
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-133 478.4 327 71.9
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 4.1e-133 478.4 327 72.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 5.3e-133 478.0 328 72.3
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 6.9e-133 477.6 327 71.6
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 6.9e-133 477.6 327 71.3
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.2e-132 476.9 325 72.0
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.5e-132 476.5 327 71.6
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.0e-132 476.1 328 71.6
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 2.0e-132 476.1 328 71.3
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 2.6e-132 475.7 327 70.6
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 3.4e-132 475.3 326 71.2
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 4.5e-132 474.9 327 71.6
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 5.9e-132 474.6 326 72.7
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 5.9e-132 474.6 327 71.3
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 5.9e-132 474.6 326 72.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.3e-131 473.4 328 71.0
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.2e-131 472.6 327 70.6
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.2e-131 472.6 326 72.4
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.9e-131 472.2 328 71.3
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.9e-131 472.2 328 71.0
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.9e-131 472.2 326 72.4
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 3.8e-131 471.9 328 71.0
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 3.8e-131 471.9 327 70.9
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 5.0e-131 471.5 327 71.6
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 8.5e-131 470.7 327 71.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 8.5e-131 470.7 327 71.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 8.5e-131 470.7 327 72.2
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.5e-131 470.7 327 70.3
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.4e-130 469.9 327 72.5
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.4e-130 469.9 326 72.1
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 1.9e-130 469.5 320 74.1
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.2e-130 468.4 327 70.9
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 5.5e-130 468.0 326 71.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 9.4e-130 467.2 328 71.0
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 9.4e-130 467.2 328 72.3
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.2e-129 466.8 327 70.9
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.6e-129 466.5 328 71.6
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.6e-129 466.5 327 71.6
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.1e-129 466.1 329 70.8
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 2.1e-129 466.1 326 70.6
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.7e-129 465.7 327 71.3
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.9e-129 464.2 329 72.0
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 7.9e-129 464.2 326 69.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 7.9e-129 464.2 352 66.8
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.4e-128 463.4 327 68.8
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.4e-128 463.4 329 71.7
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.8e-128 463.0 326 69.6
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 2.3e-128 462.6 329 69.9
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 3.0e-128 462.2 326 69.9
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 3.0e-128 462.2 326 70.2
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 6.7e-128 461.1 330 69.4
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 6.7e-128 461.1 328 70.1
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 8.8e-128 460.7 327 69.4
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.1e-127 460.3 328 71.0
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.0e-127 459.5 329 69.6
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.0e-127 459.5 329 69.3
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.0e-127 459.5 327 69.4
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.6e-127 459.1 327 69.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.3e-127 458.8 302 73.8
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 5.7e-127 458.0 363 63.6
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 9.7e-127 457.2 327 70.9
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.8e-125 453.0 326 68.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.8e-125 453.0 327 69.1
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 2.4e-125 452.6 326 69.3
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 9.1e-125 450.7 421 56.5
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.2e-124 450.3 327 69.7
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.5e-124 449.9 328 69.2
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 2.6e-124 449.1 347 65.7
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 7.7e-124 447.6 329 68.4
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-123 446.8 298 74.8
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 8.5e-123 444.1 326 67.8
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.1e-122 443.7 319 69.3
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.1e-122 443.7 369 62.3
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.9e-122 443.0 326 66.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.9e-122 443.0 327 67.9
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.5e-122 442.6 333 67.9
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 2.7e-121 439.1 326 66.0
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.8e-120 436.4 306 71.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 7.7e-116 421.0 415 54.2
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 7.2e-114 414.5 412 55.6
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.6e-113 413.3 327 63.3
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.0e-112 410.6 440 51.1
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.4e-109 400.2 335 62.4
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 6.1e-105 384.8 326 61.7
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 5.0e-99 365.2 330 57.6
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.1e-98 364.0 284 65.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 4.7e-97 358.6 332 56.6
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 8.0e-97 357.8 274 65.7
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.0e-96 355.5 339 54.9
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 4.3e-90 335.5 296 56.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-80 304.3 216 68.1
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-80 304.3 216 68.1
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.9e-78 296.2 191 73.3
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.9e-77 293.5 185 74.6
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 4.4e-71 272.3 185 71.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.2e-55 221.1 329 41.9
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.6e-55 219.9 288 43.1
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-51 207.6 112 89.3
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-51 207.6 112 89.3
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-51 207.6 112 89.3
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-51 207.6 112 89.3
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.1e-50 204.5 240 47.9
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.2e-49 198.7 112 87.5
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 4.0e-48 196.1 119 84.0
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 4.0e-48 196.1 145 64.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.3e-34 149.4 84 88.1
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.8e-33 146.0 92 77.2
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.6e-31 138.7 252 34.1
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.2e-29 132.9 71 90.1
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.2e-29 132.9 71 90.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.7e-28 130.2 91 68.1
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.2e-21 106.3 75 66.7
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.2e-17 94.0 70 62.9
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-16 91.3 68 66.2
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 6.9e-16 89.0 76 59.2
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 1.3e-06 58.2 34 70.6


User provided reference genes

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