Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.6e-50 202.6 110 100.0
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 2.9e-49 198.4 110 98.2
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.8e-46 189.1 103 98.1
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.8e-46 189.1 103 98.1
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 2.9e-44 181.8 98 100.0
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 2.9e-44 181.8 98 100.0
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 6.4e-44 180.6 99 98.0
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 6.4e-44 180.6 99 98.0
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 4.1e-43 177.9 101 94.1
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 4.6e-42 174.5 98 96.9
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 6.0e-42 174.1 98 94.9
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 6.0e-42 174.1 98 94.9
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 1.1e-40 169.9 99 94.9
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.1e-38 163.3 99 90.9
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 1.8e-38 162.5 99 89.9
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 2.2e-36 155.6 98 87.8
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 2.4e-35 152.1 99 84.8
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 9.2e-35 150.2 98 80.6
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.3e-33 146.4 98 78.6
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.3e-33 146.4 98 78.6
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 6.4e-28 127.5 101 70.3
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 4.1e-27 124.8 110 59.1
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 7.1e-27 124.0 98 69.4
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 7.1e-27 124.0 106 64.2
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 9.2e-27 123.6 104 66.3
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.2e-26 123.2 105 66.7
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 1.2e-26 123.2 110 60.9
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 1.2e-26 123.2 104 65.4
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 2.1e-26 122.5 108 62.0
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.5e-26 121.7 107 63.6
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.5e-26 121.7 107 63.6
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 4.6e-26 121.3 98 69.4
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 6.0e-26 120.9 109 63.3
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.0e-25 120.2 108 62.0
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 1.3e-25 119.8 104 63.5
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.3e-25 119.0 112 62.5
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 3.0e-25 118.6 108 60.2
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 3.9e-25 118.2 106 64.2
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 3.9e-25 118.2 104 64.4
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 5.1e-25 117.9 106 62.3
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 6.6e-25 117.5 115 58.3
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 6.6e-25 117.5 108 61.1
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 6.6e-25 117.5 105 63.8
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 6.6e-25 117.5 104 64.4
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 8.6e-25 117.1 108 62.0
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 8.6e-25 117.1 107 61.7
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 8.6e-25 117.1 107 61.7
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.1e-24 116.7 108 63.9
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.1e-24 116.7 108 61.1
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.5e-24 116.3 103 66.0
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 1.5e-24 116.3 105 61.9
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 1.5e-24 116.3 112 58.9
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.9e-24 115.9 107 61.7
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 3.3e-24 115.2 101 63.4
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 3.3e-24 115.2 108 63.9
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 5.6e-24 114.4 108 60.2
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 5.6e-24 114.4 109 57.8
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 7.3e-24 114.0 105 56.2
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 7.3e-24 114.0 106 61.3
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 9.5e-24 113.6 99 64.6
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 1.2e-23 113.2 100 63.0
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.2e-23 113.2 104 61.5
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.2e-23 113.2 112 58.0
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.2e-23 113.2 112 58.0
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 1.2e-23 113.2 108 60.2
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 1.6e-23 112.8 101 64.4
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.6e-23 112.8 110 59.1
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 2.8e-23 112.1 104 57.7
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 3.6e-23 111.7 110 58.2
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 3.6e-23 111.7 110 54.5
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 6.2e-23 110.9 110 54.5
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 8.1e-23 110.5 90 66.7
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 8.1e-23 110.5 112 58.0
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 8.1e-23 110.5 104 55.8
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 8.1e-23 110.5 98 65.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.1e-22 110.2 108 61.1
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 1.1e-22 110.2 114 56.1
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.4e-22 109.8 92 68.5
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 2.4e-22 109.0 106 58.5
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 2.4e-22 109.0 107 57.9
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 2.4e-22 109.0 84 71.4
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 3.1e-22 108.6 107 60.7
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 3.1e-22 108.6 104 54.8
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 3.1e-22 108.6 108 53.7
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 4.0e-22 108.2 110 55.5
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 4.0e-22 108.2 79 65.8
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 5.2e-22 107.8 104 62.5
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 5.2e-22 107.8 85 65.9
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 6.8e-22 107.5 97 62.9
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 6.8e-22 107.5 89 67.4
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 6.8e-22 107.5 110 56.4
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 6.8e-22 107.5 97 63.9
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 8.9e-22 107.1 78 66.7
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.2e-21 106.7 100 58.0
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.5e-21 106.3 88 65.9
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-21 106.3 87 62.1
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-21 106.3 100 58.0
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 1.5e-21 106.3 110 53.6
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.0e-21 105.9 101 58.4
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 2.6e-21 105.5 75 76.0
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.6e-21 105.5 92 60.9
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 3.4e-21 105.1 104 55.8
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 3.4e-21 105.1 109 56.0
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 4.4e-21 104.8 102 54.9
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-21 104.8 81 65.4
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-21 104.8 81 65.4
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 7.6e-21 104.0 109 56.0
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 9.9e-21 103.6 107 57.0
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 9.9e-21 103.6 97 57.7
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 9.9e-21 103.6 110 52.7
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.3e-20 103.2 93 59.1
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 1.3e-20 103.2 108 54.6
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.2e-20 102.4 110 54.5
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 2.2e-20 102.4 99 60.6
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 2.2e-20 102.4 93 63.4
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 2.2e-20 102.4 107 52.3
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 2.9e-20 102.1 110 53.6
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.8e-20 101.7 107 53.3
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 1.1e-19 100.1 95 63.2
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.4e-19 99.8 80 63.8
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 1.9e-19 99.4 98 56.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.1e-19 98.2 110 50.9
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 5.4e-19 97.8 104 53.8
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 4.6e-18 94.7 111 49.5
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 1.7e-17 92.8 83 59.0
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.3e-17 92.4 87 55.2
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 2.3e-17 92.4 108 50.0
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 3.0e-17 92.0 111 47.7
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 4.3e-16 88.2 79 60.8
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 7.3e-16 87.4 80 55.0
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 9.6e-16 87.0 86 55.8
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 1.6e-15 86.3 80 56.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 3.1e-14 82.0 103 46.6
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 5.2e-14 81.3 78 56.4
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 9.0e-14 80.5 85 57.6
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 5.1e-09 64.7 54 63.0
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 6.6e-09 64.3 80 47.5
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 3.3e-08 62.0 60 56.7
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 4.3e-08 61.6 58 53.4
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 7.3e-08 60.8 59 52.5
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.3e-07 60.1 54 59.3


User provided reference genes

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