Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.7e-51 205.7 100 100.0
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.7e-51 205.7 100 100.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.7e-51 205.7 100 100.0
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 3.9e-48 194.5 104 93.3
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 5.1e-48 194.1 104 93.3
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 6.6e-40 167.2 103 80.6
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.6e-38 162.5 104 77.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 2.1e-38 162.2 105 78.1
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 3.2e-34 148.3 106 69.8
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.2e-33 146.4 103 68.9
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 4.6e-33 144.4 105 72.4
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 4.6e-33 144.4 104 69.2
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.3e-30 136.3 103 63.1
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 6.2e-30 134.0 100 68.0
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.4e-29 132.9 100 67.0
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 2.4e-29 132.1 100 67.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 2.4e-29 132.1 100 67.0
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 3.1e-29 131.7 100 67.0
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 7.8e-25 117.1 110 55.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.1e-22 109.0 71 66.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 4.8e-22 107.8 96 56.2
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 4.8e-22 107.8 69 65.2
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 6.2e-22 107.5 69 65.2
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 8.1e-22 107.1 93 54.8
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 8.1e-22 107.1 77 66.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.4e-21 106.3 70 64.3
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.8e-21 105.9 83 59.0
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.4e-21 105.5 86 57.0
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.4e-21 105.5 69 65.2
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 5.3e-21 104.4 77 62.3
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 5.3e-21 104.4 81 61.7
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 6.9e-21 104.0 65 69.2
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 6.9e-21 104.0 79 57.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 6.9e-21 104.0 70 62.9
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 6.9e-21 104.0 68 66.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 6.9e-21 104.0 70 62.9
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.5e-20 102.8 67 62.7
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 2.6e-20 102.1 82 57.3
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.6e-20 102.1 69 65.2
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 3.4e-20 101.7 73 60.3
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 3.4e-20 101.7 68 66.2
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 3.4e-20 101.7 73 60.3
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 4.5e-20 101.3 71 63.4
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 5.8e-20 100.9 86 55.8
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 7.6e-20 100.5 69 62.3
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-19 99.8 71 60.6
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.9e-19 98.6 70 61.4
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.9e-19 98.6 70 57.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 4.9e-19 97.8 72 61.1
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 8.4e-19 97.1 65 61.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.4e-18 96.3 65 66.2
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.9e-18 95.9 70 55.7
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.4e-18 95.5 65 64.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.2e-18 94.7 73 57.5
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.3e-18 93.6 70 58.6
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 9.3e-18 93.6 70 58.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 9.3e-18 93.6 77 55.8
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-17 93.2 82 56.1
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.2e-17 93.2 80 52.5
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.6e-17 92.8 70 60.0
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.6e-17 92.8 65 63.1
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-17 92.8 77 55.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-17 92.8 77 55.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-17 92.8 82 56.1
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.6e-17 92.8 77 55.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.6e-17 92.8 82 56.1
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 1.6e-17 92.8 67 62.7
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.1e-17 92.4 67 59.7
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 3.5e-17 91.7 97 48.5
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.6e-17 91.3 70 58.6
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.6e-17 91.3 78 55.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 6.0e-17 90.9 68 60.3
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 7.9e-17 90.5 70 58.6
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.0e-16 90.1 66 62.1
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.0e-16 90.1 83 51.8
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.0e-16 90.1 69 59.4
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.0e-16 90.1 68 58.8
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.3e-16 89.7 71 57.7
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.3e-16 89.0 71 56.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.3e-16 89.0 79 48.1
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 3.0e-16 88.6 77 49.4
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.9e-16 88.2 65 60.0
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.9e-16 88.2 67 58.2
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 5.1e-16 87.8 88 47.7
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 6.7e-16 87.4 88 48.9
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 6.7e-16 87.4 67 59.7
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.7e-16 87.4 67 59.7
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.7e-16 87.4 67 59.7
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.7e-16 87.4 67 59.7
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 6.7e-16 87.4 77 50.6
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.7e-16 87.4 70 52.9
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 6.7e-16 87.4 67 59.7
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.1e-15 86.7 82 52.4
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.9e-15 85.9 72 56.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.9e-15 85.9 65 53.8
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.5e-15 85.5 97 42.3
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 3.3e-15 85.1 79 45.6
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 3.3e-15 85.1 81 51.9
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.3e-15 84.7 67 58.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 4.3e-15 84.7 77 46.8
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 5.6e-15 84.3 82 52.4
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 5.6e-15 84.3 79 51.9
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 7.4e-15 84.0 77 53.2
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 7.4e-15 84.0 77 53.2
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.6e-15 83.6 77 53.2
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.6e-15 83.6 77 53.2
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 9.6e-15 83.6 84 48.8
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.3e-14 83.2 65 60.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 2.1e-14 82.4 70 51.4
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 2.1e-14 82.4 70 51.4
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 4.8e-14 81.3 66 54.5
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 8.1e-14 80.5 82 47.6
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.4e-13 79.7 65 52.3
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.4e-13 79.0 65 55.4
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.6e-12 75.5 64 48.4
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.5e-12 74.7 73 49.3
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 7.6e-12 73.9 74 45.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.7e-11 72.8 69 43.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.9e-10 69.3 51 56.9
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 2.5e-10 68.9 62 51.6
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 2.7e-09 65.5 53 54.7
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 3.5e-09 65.1 56 55.4
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.8e-08 62.8 60 46.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 5.1e-08 61.2 43 62.8
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 6.7e-08 60.8 72 41.7
Zm00001eb078160 Zea mays HOM05D000262 ORTHO05D009865 1.5e-07 59.7 82 37.8
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.9e-07 59.3 46 58.7
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 9.6e-07 57.0 77 32.5
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 8.2e-06 53.9 43 51.2


User provided reference genes

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