Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-170 603.6 360 100.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.0e-167 592.0 379 95.0
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 3.0e-167 592.0 379 95.0
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.8e-135 486.5 378 84.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-119 432.2 350 83.7
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-107 393.7 367 69.5
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 8.0e-104 381.3 405 70.4
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-103 380.9 402 71.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-103 380.6 399 71.4
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.8e-103 380.2 405 70.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-103 379.8 396 71.2
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 8.9e-103 377.9 426 63.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 8.9e-103 377.9 423 64.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 6.4e-101 371.7 380 71.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-99 367.5 380 71.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-99 367.1 380 71.3
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 8.6e-98 361.3 380 62.9
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 9.5e-89 331.3 384 67.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.6e-88 330.5 426 58.7
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 2.7e-83 313.2 419 62.5
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.8e-80 303.1 414 61.1
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 6.2e-80 302.0 415 50.8
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 6.0e-75 285.4 457 54.9
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 5.3e-71 272.3 353 51.6
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.6e-67 260.8 450 53.6
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.2e-60 236.1 432 51.9
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 7.9e-51 205.3 426 38.3
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 7.9e-51 205.3 426 38.3
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 4.3e-49 199.5 204 60.3
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.6e-46 190.3 421 41.6
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.1e-44 184.9 417 37.4
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 7.9e-43 178.7 413 35.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 8.7e-42 175.3 413 35.6
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 8.7e-42 175.3 418 43.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 8.7e-42 175.3 412 35.2
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.7e-40 169.9 417 40.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 9.0e-39 165.2 441 35.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 4.2e-36 156.4 418 40.2
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 5.5e-36 156.0 438 32.9
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 5.5e-36 156.0 425 37.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.6e-35 153.3 420 34.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.0e-34 151.8 413 37.3
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.8e-34 151.0 398 37.9
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 3.3e-33 146.7 422 32.9
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 9.7e-33 145.2 402 36.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.7e-32 144.4 422 33.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.2e-32 144.1 422 31.5
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.8e-32 142.9 409 36.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.3e-32 142.5 430 39.8
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-31 141.7 415 33.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.1e-31 141.7 401 35.7
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.1e-31 140.2 406 32.3
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-30 137.9 237 42.6
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-29 134.8 382 33.0
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-29 134.8 382 33.0
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-29 134.0 429 33.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.9e-29 133.7 382 32.2
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.8e-29 133.3 410 32.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.8e-29 133.3 392 31.6
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.4e-28 131.3 414 32.4
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.2e-28 130.2 442 32.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.2e-28 130.2 419 37.7
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-28 130.2 383 31.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-28 130.2 383 31.9
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 4.2e-28 129.8 399 32.1
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 7.2e-28 129.0 400 37.8
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 9.4e-28 128.6 382 36.4
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 9.4e-28 128.6 383 33.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.7e-27 126.3 399 37.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 7.9e-27 125.6 220 42.7
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.0e-26 125.2 399 38.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.0e-26 125.2 399 39.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.0e-26 125.2 399 38.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.0e-26 125.2 432 32.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.3e-26 124.0 391 32.2
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.3e-26 124.0 439 31.4
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.9e-26 123.2 369 32.2
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 6.7e-26 122.5 411 32.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-25 121.7 388 37.4
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-25 121.3 431 31.1
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.0e-25 120.9 397 39.3
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-25 120.9 437 30.7
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.0e-25 120.9 431 31.1
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.6e-25 120.6 437 30.7
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 4.4e-25 119.8 404 34.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.3e-24 115.9 438 30.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 8.2e-24 115.5 411 33.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-23 115.2 382 30.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.8e-23 114.4 365 31.2
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.1e-23 113.6 379 31.7
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 4.1e-23 113.2 202 39.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.1e-23 113.2 425 34.6
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-22 111.7 419 30.3
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.0e-22 110.9 260 37.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.0e-22 110.9 376 30.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.9e-21 107.1 355 28.7
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 3.8e-21 106.7 390 30.8
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 3.8e-21 106.7 407 30.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.8e-21 106.7 222 36.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 3.8e-21 106.7 409 34.2
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.0e-21 106.3 227 39.6
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.1e-20 105.1 371 29.9
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.1e-20 105.1 226 36.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.6e-19 101.3 378 29.4
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 4.7e-19 99.8 89 58.4
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 6.1e-19 99.4 392 28.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-18 97.1 348 29.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-18 97.1 348 29.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.3e-17 93.6 407 28.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.3e-17 93.6 388 27.8
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.3e-17 93.6 389 27.8
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 7.5e-17 92.4 413 27.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 7.5e-17 92.4 203 38.4
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 9.7e-17 92.0 233 35.6
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 6.3e-16 89.4 411 29.0
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 8.2e-16 89.0 221 35.3
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.4e-15 88.2 400 28.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.4e-15 88.2 369 26.0
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 5.3e-15 86.3 384 27.3
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 7.0e-15 85.9 233 34.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.0e-14 84.3 267 31.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.7e-14 84.0 197 35.5
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.5e-14 83.6 207 33.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 5.9e-14 82.8 207 33.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 5.9e-14 82.8 179 35.2
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 7.7e-14 82.4 207 33.3
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.0e-13 82.0 381 28.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 6.5e-13 79.3 201 34.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 6.5e-13 79.3 201 34.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 4.2e-12 76.6 382 26.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.5e-12 76.3 200 36.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 9.4e-12 75.5 236 32.6
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 9.4e-12 75.5 236 32.6
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.4e-12 75.5 180 35.6
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-11 75.1 180 35.6
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.6e-11 74.7 387 26.1
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.7e-11 73.2 164 36.0
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.8e-10 71.2 180 35.0
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.0e-10 70.5 336 27.1
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 1.2e-09 68.6 96 38.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.0e-09 67.8 367 27.0
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 5.7e-09 66.2 150 32.7
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.3e-08 65.1 248 30.6
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 2.2e-08 64.3 46 60.9
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.4e-07 60.8 77 39.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 5.4e-07 59.7 101 38.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 7.0e-07 59.3 402 24.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.9e-06 56.2 113 38.9


User provided reference genes

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