Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 2.9e-55 218.4 117 100.0
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 1.5e-54 216.1 117 99.1
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 3.2e-54 214.9 117 98.3
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 9.4e-54 213.4 117 97.4
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 9.4e-54 213.4 117 97.4
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 5.9e-48 194.1 119 88.2
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 5.9e-48 194.1 119 88.2
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 3.8e-47 191.4 116 89.7
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 6.5e-47 190.7 119 87.4
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 3.2e-46 188.3 119 84.0
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 3.2e-46 188.3 119 84.0
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 2.7e-45 185.3 119 83.2
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 4.4e-43 177.9 119 81.5
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 5.7e-43 177.6 119 80.7
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 5.7e-43 177.6 119 80.7
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 7.0e-41 170.6 120 79.2
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 9.1e-41 170.2 119 77.3
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.2e-35 153.3 119 68.9
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 3.8e-31 138.3 116 63.8
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 5.1e-15 84.7 107 45.8
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 2.1e-13 79.3 105 42.9
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.1e-12 75.5 105 43.8
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.8e-12 74.3 105 42.9
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-11 73.6 105 41.9
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.5e-11 73.2 104 41.3
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 2.0e-11 72.8 106 43.4
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 2.0e-11 72.8 107 40.2
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 4.4e-11 71.6 111 44.1
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 7.5e-11 70.9 104 37.5
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 7.5e-11 70.9 104 38.5
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.7e-10 69.7 113 42.5
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 4.9e-10 68.2 104 36.5
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 4.9e-10 68.2 110 41.8
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 4.9e-10 68.2 107 41.1
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 4.9e-10 68.2 109 41.3
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 6.4e-10 67.8 104 35.6
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 8.3e-10 67.4 113 37.2
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 8.3e-10 67.4 107 39.3
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 1.1e-09 67.0 114 38.6
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 1.4e-09 66.6 103 36.9
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.9e-09 66.2 104 38.5
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.9e-09 66.2 113 42.5
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 3.2e-09 65.5 104 40.4
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 4.1e-09 65.1 107 35.5
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.2e-08 63.5 106 37.7
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.2e-08 63.5 107 38.3
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.6e-08 63.2 105 40.0
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.6e-08 63.2 116 36.2
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.1e-08 62.8 116 36.2
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.1e-08 62.8 105 37.1
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 2.1e-08 62.8 111 37.8
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 2.7e-08 62.4 108 37.0
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 3.5e-08 62.0 103 35.9
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.6e-08 61.6 106 36.8
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 6.0e-08 61.2 106 38.7
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 7.8e-08 60.8 106 39.6
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 7.8e-08 60.8 104 36.5
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 7.8e-08 60.8 109 39.4
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.0e-07 60.5 104 34.6
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.0e-07 60.5 97 41.2
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.7e-07 59.7 114 36.8
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 2.3e-07 59.3 118 41.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.0e-07 58.9 104 34.6
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 5.1e-07 58.2 111 38.7
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 6.6e-07 57.8 104 36.5
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 6.6e-07 57.8 107 36.4
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.6e-07 57.8 104 34.6
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 6.6e-07 57.8 104 34.6
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 6.6e-07 57.8 120 32.5
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.6e-07 57.8 109 35.8
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 8.6e-07 57.4 106 34.0
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 8.6e-07 57.4 106 34.9
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 8.6e-07 57.4 111 38.7
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 8.6e-07 57.4 117 35.9
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.1e-06 57.0 111 38.7
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 1.1e-06 57.0 111 35.1
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.1e-06 57.0 113 35.4
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.5e-06 56.6 111 37.8
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.5e-06 56.6 103 38.8
BcaB07g30277 Brassica carinata HOM05D005726 ORTHO05D001733 1.9e-06 56.2 37 86.5
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.9e-06 56.2 107 34.6
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 2.5e-06 55.8 116 33.6
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 3.3e-06 55.5 102 37.3
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.3e-06 55.5 110 38.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.3e-06 55.5 110 38.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 3.3e-06 55.5 110 38.2
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 3.3e-06 55.5 106 33.0
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 3.3e-06 55.5 117 31.6
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 5.6e-06 54.7 92 38.0
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 7.3e-06 54.3 112 35.7
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 9.5e-06 53.9 112 34.8


User provided reference genes

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