Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-195 686.4 348 100.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-195 686.4 348 100.0
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-195 686.4 348 100.0
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.4e-184 648.3 349 94.6
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 8.4e-183 643.7 349 93.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 8.4e-183 643.7 350 94.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 8.4e-183 643.7 349 93.7
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 8.4e-183 643.7 349 93.7
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.9e-182 642.5 350 92.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 7.1e-182 640.6 350 93.7
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.5e-181 638.3 349 93.1
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 9.6e-179 630.2 347 92.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.4e-177 626.3 349 91.4
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 4.0e-177 624.8 346 91.9
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 4.0e-177 624.8 346 91.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 9.3e-174 613.6 348 89.7
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.9e-166 589.3 348 84.8
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.1e-158 563.5 351 83.5
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 3.4e-152 542.0 356 76.1
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.4e-150 536.6 350 77.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.9e-150 536.2 349 78.8
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-150 535.8 357 77.3
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-149 533.5 357 76.8
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.6e-149 533.1 346 78.3
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.1e-149 532.7 358 75.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-148 530.4 350 77.4
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-148 529.3 357 76.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-148 528.9 357 76.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.1e-147 526.9 326 80.4
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.0e-147 526.2 366 72.7
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 9.7e-147 523.9 325 80.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.3e-146 523.5 351 75.2
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.2e-146 522.7 356 73.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.2e-146 522.7 358 72.3
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.8e-146 522.3 355 75.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 4.8e-146 521.5 347 75.2
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 8.2e-146 520.8 357 74.5
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-145 520.0 349 77.1
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-145 520.0 349 77.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.4e-145 519.2 350 74.3
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.4e-145 519.2 352 76.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 3.1e-145 518.8 345 75.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.1e-145 518.8 352 74.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.1e-145 518.5 350 74.9
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 6.9e-145 517.7 364 74.7
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-145 517.3 385 70.9
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 9.1e-145 517.3 345 72.8
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 9.1e-145 517.3 345 72.8
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.2e-144 516.9 356 73.9
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.3e-143 513.5 343 75.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.7e-143 513.1 336 78.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.2e-143 512.7 320 80.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.8e-143 511.9 353 74.5
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.8e-143 511.9 359 73.0
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 6.5e-143 511.1 328 77.7
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-142 510.0 323 78.9
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.2e-142 508.4 345 74.5
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 5.5e-142 508.1 367 70.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 5.5e-142 508.1 356 72.5
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.2e-141 506.9 356 71.9
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.6e-141 506.5 363 71.9
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.7e-141 505.0 328 78.0
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 4.7e-141 505.0 367 71.7
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.8e-140 503.1 326 77.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-140 502.7 360 72.5
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.3e-140 502.7 300 81.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.9e-140 501.9 320 77.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.1e-139 500.4 345 73.3
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-139 499.6 348 71.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.3e-139 498.8 322 76.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 3.3e-139 498.8 348 71.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 9.7e-139 497.3 353 71.7
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.7e-138 496.5 341 72.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.8e-138 495.7 349 71.9
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 3.7e-138 495.4 351 72.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 4.8e-138 495.0 281 86.5
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.4e-137 493.4 333 74.5
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 7.0e-137 491.1 295 81.4
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.6e-136 489.2 334 73.4
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.5e-136 488.4 346 69.7
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 5.9e-136 488.0 358 68.7
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.7e-136 487.6 322 75.2
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.7e-136 487.6 322 75.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 7.7e-136 487.6 340 72.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.7e-135 486.5 360 67.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 3.8e-135 485.3 299 76.6
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.8e-135 485.3 314 78.0
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.2e-133 480.3 298 77.5
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 6.1e-133 478.0 350 69.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.0e-132 477.2 349 69.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.8e-132 476.5 309 74.8
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.3e-132 476.1 298 77.5
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.4e-131 471.9 333 72.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 5.7e-131 471.5 326 71.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.7e-131 471.5 338 69.2
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.3e-130 470.3 308 75.0
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.8e-130 468.4 349 68.2
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.4e-129 466.8 336 71.7
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.4e-129 466.8 344 70.1
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-128 461.8 319 73.7
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.9e-128 461.5 342 70.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.9e-127 459.1 335 70.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-126 456.8 377 64.7
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-125 453.4 338 71.0
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.6e-125 452.2 332 67.2
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 4.7e-125 451.8 295 72.5
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 6.1e-125 451.4 295 75.9
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.2e-123 447.2 361 66.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.0e-123 446.4 352 63.9
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.0e-123 446.4 317 68.8
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-122 443.4 323 70.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.8e-121 439.9 322 68.0
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.6e-120 436.8 313 68.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.6e-120 436.8 272 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.7e-120 436.0 323 66.6
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 5.0e-119 431.8 348 67.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 5.0e-119 431.8 360 63.9
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.1e-117 426.4 294 74.1
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.0e-116 422.5 354 64.4
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.5e-115 420.2 369 62.1
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.8e-114 416.0 295 71.9
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.7e-112 409.5 312 67.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.7e-106 390.2 347 59.7
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.2e-105 386.0 291 67.4
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 7.8e-104 381.3 233 81.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.7e-103 380.2 229 81.7
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.6e-103 377.9 244 76.2
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.3e-100 369.8 303 63.4
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.6e-99 366.3 295 64.4
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.7e-98 363.6 298 62.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 9.2e-89 331.3 228 71.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.2e-85 318.5 226 68.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.6e-83 311.6 349 51.3
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.7e-82 310.5 211 68.7
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.7e-82 309.3 240 68.3
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.2e-73 279.6 197 72.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.1e-72 276.9 262 60.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.4e-67 259.6 178 75.3
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.8e-61 239.2 173 66.5
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 9.0e-60 235.0 167 74.3
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.9e-40 168.7 129 65.1
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-39 167.2 120 67.5
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.5e-38 163.7 129 61.2
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.0e-36 155.2 125 60.8
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-31 139.4 117 67.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 7.4e-30 135.6 131 58.8
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.3e-29 134.8 304 31.2
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-29 134.0 79 96.2
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.3e-29 132.5 99 63.6
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.9e-28 129.0 118 62.7
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-27 127.9 82 73.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-24 115.9 142 50.0
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.0e-23 113.6 88 67.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 9.7e-22 108.6 89 60.7
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.1e-20 103.2 86 57.0
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.5e-18 95.5 88 48.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.1e-16 89.4 52 71.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-15 87.0 73 67.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.5e-14 84.7 52 71.2


User provided reference genes

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