Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17213 Brassica carinata HOM05D006961 ORTHO05D008809 7.0e-75 283.9 145 100.0
C02p51430 Brassica napus HOM05D006961 ORTHO05D008809 7.0e-75 283.9 145 100.0
BolC2t11231H Brassica oleracea HOM05D006961 ORTHO05D008809 7.0e-75 283.9 145 100.0
A02p33440 Brassica napus HOM05D006961 ORTHO05D008809 1.4e-70 269.6 145 96.6
Sp2g14330 Schrenkiella parvula HOM05D006961 ORTHO05D008809 1.0e-65 253.4 144 91.0
Thhalv10005024m.g Eutrema salsugineum HOM05D006961 ORTHO05D008809 6.6e-65 250.8 144 88.9
AT2G03420 Arabidopsis thaliana HOM05D006961 ORTHO05D008809 2.3e-62 242.3 144 84.0
BcaB07g30670 Brassica carinata HOM05D006961 ORTHO05D008809 5.2e-62 241.1 144 88.2
BcaC04g21488 Brassica carinata HOM05D006961 ORTHO05D008809 6.8e-62 240.7 144 86.1
C09p31220 Brassica napus HOM05D006961 ORTHO05D008809 6.8e-62 240.7 144 86.1
BolC9t55978H Brassica oleracea HOM05D006961 ORTHO05D008809 6.8e-62 240.7 144 86.1
Carub.0005s0238 Capsella rubella HOM05D006961 ORTHO05D008809 6.8e-62 240.7 144 84.7
BraA09t38036Z Brassica rapa HOM05D006961 ORTHO05D008809 2.6e-61 238.8 144 85.4
A09p24430 Brassica napus HOM05D006961 ORTHO05D008809 2.4e-59 232.3 144 84.7
CARHR145760 Cardamine hirsuta HOM05D006961 ORTHO05D008809 4.6e-58 228.0 146 83.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.3e-52 209.9 127 83.5
AL5G13170 Arabidopsis lyrata HOM05D006961 ORTHO05D008809 2.9e-52 208.8 117 88.9
THA.LOC104824066 Tarenaya hassleriana HOM05D006961 ORTHO05D008809 9.9e-45 183.7 148 64.9
COL.COLO4_27931 Corchorus olitorius HOM05D006961 ORTHO05D008809 2.4e-35 152.5 121 64.5
MD13G1065900 Malus domestica HOM05D006961 ORTHO05D008809 3.5e-34 148.7 135 57.8
Atru.chr11.1688 Acer truncatum HOM05D006961 ORTHO05D008809 6.0e-34 147.9 137 57.7
ECA234G0986 Erigeron canadensis HOM05D006961 ORTHO05D008809 6.0e-34 147.9 135 60.7
Gohir.D05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 1.8e-33 146.4 117 68.4
HanXRQChr12g0379241 Helianthus annuus HOM05D006961 ORTHO05D008809 6.7e-33 144.4 96 74.0
Eucgr.G02462 Eucalyptus grandis HOM05D006961 ORTHO05D008809 2.5e-32 142.5 113 66.4
Ciclev10032810m.g Citrus clementina HOM05D006961 ORTHO05D008809 3.3e-32 142.1 112 66.1
MSTRG.7764 Avicennia marina HOM05D006961 ORTHO05D008809 4.3e-32 141.7 108 65.7
CANSAT64G0471 Cannabis sativa HOM05D006961 ORTHO05D008809 5.6e-32 141.4 138 57.2
Gohir.A05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 5.6e-32 141.4 99 70.7
Lsat_1_v5_gn_4_10260 Lactuca sativa HOM05D006961 ORTHO05D008809 2.1e-31 139.4 96 71.9
Psat2g128160 Pisum sativum HOM05D006961 ORTHO05D008809 2.8e-31 139.0 140 56.4
PGR119G1669 Punica granatum HOM05D006961 ORTHO05D008809 3.7e-31 138.7 122 63.9
Ca_04910_v3 Cicer arietinum L. HOM05D006961 ORTHO05D008809 4.8e-31 138.3 111 64.9
Thecc.02G336300 Theobroma cacao HOM05D006961 ORTHO05D008809 4.8e-31 138.3 119 61.3
Prupe.1G282200 Prunus persica HOM05D006961 ORTHO05D008809 1.1e-30 137.1 127 57.5
TPR.G24476 Trifolium pratense HOM05D006961 ORTHO05D008809 1.8e-30 136.3 110 64.5
Actinidia19920 Actinidia chinensis HOM05D006961 ORTHO05D008809 2.4e-30 136.0 119 61.3
Duzib268G0330 Durio zibethinus HOM05D006961 ORTHO05D008809 3.1e-30 135.6 99 65.7
Hma1.2p1_0357F.1_g134450 Hydrangea macrophylla HOM05D006961 ORTHO05D008809 5.3e-30 134.8 99 68.7
Sed0005182 Sechium edule HOM05D006961 ORTHO05D008809 6.9e-30 134.4 144 53.5
SalBow2G3426 Salvia bowleyana HOM05D006961 ORTHO05D008809 9.0e-30 134.0 99 67.7
Sopen05g007430 Solanum pennellii HOM05D006961 ORTHO05D008809 1.2e-29 133.7 110 64.5
TWI75G1056 Tripterygium wilfordii HOM05D006961 ORTHO05D008809 1.2e-29 133.7 125 56.8
PGSC0003DMG400028327 Solanum tuberosum HOM05D006961 ORTHO05D008809 1.5e-29 133.3 110 64.5
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 2.0e-29 132.9 103 66.0
CsaV3_5G025620 Cucumis sativus L. HOM05D006961 ORTHO05D008809 2.0e-29 132.9 126 57.1
DCAR_027451 Daucus carota HOM05D006961 ORTHO05D008809 2.0e-29 132.9 148 56.1
Cfa008905 Carpinus fangiana HOM05D006961 ORTHO05D008809 2.6e-29 132.5 103 65.0
FvH4_4g30480 Fragaria vesca HOM05D006961 ORTHO05D008809 2.6e-29 132.5 118 61.0
FAN07G0372 Fragaria x ananassa HOM05D006961 ORTHO05D008809 2.6e-29 132.5 143 53.8
Lalb_Chr17g0341001 Lupinus albus HOM05D006961 ORTHO05D008809 2.6e-29 132.5 142 52.8
Medtr5g043580 Medicago truncatula HOM05D006961 ORTHO05D008809 2.6e-29 132.5 148 52.0
RcHm_v2.0_Chr4g0438851 Rosa chinensis HOM05D006961 ORTHO05D008809 3.4e-29 132.1 116 63.8
TAR622G0866 Trochodendron aralioides HOM05D006961 ORTHO05D008809 3.4e-29 132.1 104 63.5
vmacro01328 Vaccinium macrocarpon HOM05D006961 ORTHO05D008809 3.4e-29 132.1 98 69.4
Cpa.g.sc1.93 Carica papaya HOM05D006961 ORTHO05D008809 4.5e-29 131.7 132 56.1
CiPaw.06G090400 Carya illinoinensis HOM05D006961 ORTHO05D008809 4.5e-29 131.7 112 65.2
FAN17G2308 Fragaria x ananassa HOM05D006961 ORTHO05D008809 4.5e-29 131.7 118 61.0
FAN22G0366 Fragaria x ananassa HOM05D006961 ORTHO05D008809 9.9e-29 130.6 118 61.0
MELO3C002920.2 Cucumis melo HOM05D006961 ORTHO05D008809 1.3e-28 130.2 117 59.0
Nitab4.5_0000334g0230 Nicotiana tabacum HOM05D006961 ORTHO05D008809 1.3e-28 130.2 110 60.9
Peaxi162Scf00314g00025 Petunia axillaris HOM05D006961 ORTHO05D008809 1.3e-28 130.2 110 61.8
QL03p070935 Quercus lobata HOM05D006961 ORTHO05D008809 1.3e-28 130.2 112 62.5
CAN.G1340.11 Capsicum annuum HOM05D006961 ORTHO05D008809 2.2e-28 129.4 110 61.8
GSVIVG01012179001 Vitis vinifera HOM05D006961 ORTHO05D008809 2.2e-28 129.4 133 51.9
arahy.Tifrunner.gnm1.ann1.T2VQ83 Arachis hypogaea HOM05D006961 ORTHO05D008809 2.9e-28 129.0 139 52.5
arahy.Tifrunner.gnm1.ann1.TP0XC6 Arachis hypogaea HOM05D006961 ORTHO05D008809 2.9e-28 129.0 139 52.5
Dinv34116 Davidia involucrata HOM05D006961 ORTHO05D008809 2.9e-28 129.0 137 53.3
Nn3g17372 Nelumbo nucifera HOM05D006961 ORTHO05D008809 2.9e-28 129.0 124 54.8
Lj2g0005939 Lotus japonicus HOM05D006961 ORTHO05D008809 3.8e-28 128.6 149 50.3
Solyc05g012600.3 Solanum lycopersicum HOM05D006961 ORTHO05D008809 3.8e-28 128.6 111 61.3
SGA_v2.0_scaffold16G07754 Striga asiatica HOM05D006961 ORTHO05D008809 3.8e-28 128.6 95 67.4
AUR62003136 Chenopodium quinoa HOM05D006961 ORTHO05D008809 4.9e-28 128.3 96 71.9
unitig_22.g6499 Utricularia gibba HOM05D006961 ORTHO05D008809 6.4e-28 127.9 112 60.7
ClCG09G020750 Citrullus lanatus HOM05D006961 ORTHO05D008809 1.4e-27 126.7 151 48.3
PSO478G0730 Papaver somniferum HOM05D006961 ORTHO05D008809 1.4e-27 126.7 111 59.5
Potri.010G161400 Populus trichocarpa HOM05D006961 ORTHO05D008809 1.9e-27 126.3 149 48.3
AUR62007955 Chenopodium quinoa HOM05D006961 ORTHO05D008809 2.4e-27 125.9 140 53.6
Ah.03g139190 Amaranthus hybridus HOM05D006961 ORTHO05D008809 3.2e-27 125.6 139 54.7
Hund05862 Selenicereus undatus HOM05D006961 ORTHO05D008809 4.2e-27 125.2 112 62.5
PSO017G3353 Papaver somniferum HOM05D006961 ORTHO05D008809 7.1e-27 124.4 111 58.6
Aqoxy3G00448 Aquilegia oxysepala HOM05D006961 ORTHO05D008809 1.2e-26 123.6 96 62.5
MD16G1064700 Malus domestica HOM05D006961 ORTHO05D008809 1.2e-26 123.6 117 57.3
Glyma.01G055400 Glycine max HOM05D006961 ORTHO05D008809 1.6e-26 123.2 156 47.4
VMungo1215G1627 Vigna mungo HOM05D006961 ORTHO05D008809 1.6e-26 123.2 151 48.3
CSS0004568 Camellia sinensis var. sinensis HOM05D006961 ORTHO05D008809 2.1e-26 122.9 105 61.9
Gorai.009G326100 Gossypium raimondii HOM05D006961 ORTHO05D008809 2.7e-26 122.5 107 63.6
Rhsim12G0076500 Rhododendron simsii HOM05D006961 ORTHO05D008809 2.7e-26 122.5 110 60.0
CDE07G0364 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 3.5e-26 122.1 92 65.2
Manes.05G107700 Manihot esculenta HOM05D006961 ORTHO05D008809 1.0e-25 120.6 106 60.4
Cc11_g12360 Coffea canephora HOM05D006961 ORTHO05D008809 1.8e-25 119.8 90 65.6
Glyma.02G113800 Glycine max HOM05D006961 ORTHO05D008809 2.3e-25 119.4 150 46.7
EL10Ac6g14957 Beta vulgaris HOM05D006961 ORTHO05D008809 5.1e-25 118.2 96 63.5
Oeu015341.2 Olea europaea HOM05D006961 ORTHO05D008809 5.1e-25 118.2 78 71.8
Migut.L01221 Erythranthe guttata HOM05D006961 ORTHO05D008809 6.7e-25 117.9 113 55.8
ATR0111G017 Amborella trichopoda HOM05D006961 ORTHO05D008809 1.5e-24 116.7 91 59.3
HPP92_023624 Vanilla planifolia HOM05D006961 ORTHO05D008809 1.5e-24 116.7 92 62.0
HPP92_023640 Vanilla planifolia HOM05D006961 ORTHO05D008809 1.5e-24 116.7 92 62.0
CDE04G0363 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 2.5e-24 115.9 91 63.7
MBI16_g15564_MAGBIO Magnolia biondii HOM05D006961 ORTHO05D008809 4.3e-24 115.2 115 56.5
Lj3A1032T68 Lonicera japonica HOM05D006961 ORTHO05D008809 5.6e-24 114.8 90 64.4
Zm00001eb400470 Zea mays HOM05D006961 ORTHO05D008809 2.1e-23 112.8 109 56.0
Actinidia31945 Actinidia chinensis HOM05D006961 ORTHO05D008809 6.2e-23 111.3 83 68.7
Sc04g0007750 Simmondsia chinensis HOM05D006961 ORTHO05D008809 6.9e-22 107.8 73 68.5
Zm00001eb176890 Zea mays HOM05D006961 ORTHO05D008809 9.0e-22 107.5 80 62.5
SEGI_13566 Sequoiadendron giganteum HOM05D006961 ORTHO05D008809 3.4e-21 105.5 91 58.2
SalBow2G3119 Salvia bowleyana HOM05D006961 ORTHO05D008809 1.0e-17 94.0 70 68.6
Mapoly0047s0086 Marchantia polymorpha HOM05D006961 ORTHO05D008809 3.7e-15 85.5 144 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3757 Anthoceros agrestis HOM05D006961 ORTHO05D008809 6.5e-12 74.7 93 46.2
Pp3c5_22460 Physcomitrium patens HOM05D006961 ORTHO05D008809 1.0e-09 67.4 92 42.4
CBR_g50745 Chara braunii HOM05D006961 ORTHO05D008809 4.8e-07 58.5 82 35.4
SMO356G0726 Selaginella moellendorffii HOM05D006961 ORTHO05D008809 5.3e-06 55.1 90 38.9


User provided reference genes

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