Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p51330 Brassica napus HOM05D003448 ORTHO05D024613 2.2e-94 349.0 181 100.0
C02p51360 Brassica napus HOM05D003448 ORTHO05D024613 2.2e-94 349.0 181 100.0
BolC2t11227H Brassica oleracea HOM05D003448 ORTHO05D024613 2.2e-94 349.0 181 100.0
BolC2t11225H Brassica oleracea HOM05D003448 ORTHO05D024613 1.5e-79 299.7 154 100.0
BraA02t08358Z Brassica rapa HOM05D003448 ORTHO05D024613 4.0e-51 205.3 173 71.7
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 7.0e-24 114.8 62 93.5
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 3.6e-20 102.4 62 85.5
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 8.1e-20 101.3 60 85.0
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 8.1e-20 101.3 60 85.0
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 8.1e-20 101.3 60 85.0
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 8.9e-19 97.8 86 65.1
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-18 97.4 60 83.3
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 1.2e-18 97.4 60 83.3
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.7e-17 93.6 81 64.2
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.7e-17 93.6 47 100.0
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 2.9e-17 92.8 63 74.6
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.4e-16 90.5 60 78.3
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 2.4e-16 89.7 60 80.0
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 3.2e-16 89.4 60 78.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 9.2e-16 87.8 62 69.4
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.5e-15 85.9 60 73.3
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.3e-14 83.2 53 73.6
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 3.3e-13 79.3 83 55.4
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 4.3e-13 79.0 62 64.5
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 3.6e-12 75.9 87 50.6
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 6.2e-12 75.1 61 62.3
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 6.2e-12 75.1 74 56.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.1e-12 74.7 84 50.0
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.1e-11 74.3 56 64.3
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.4e-11 73.9 84 50.0
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.8e-11 73.6 62 59.7
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 4.0e-11 72.4 73 49.3
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 5.2e-11 72.0 63 60.3
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 6.8e-11 71.6 60 58.3
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 6.8e-11 71.6 72 56.9
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 8.9e-11 71.2 59 66.1
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 8.9e-11 71.2 50 66.0
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.2e-10 70.9 83 49.4
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.2e-10 70.9 63 58.7
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.5e-10 70.5 68 57.4
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.5e-10 70.5 87 48.3
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.0e-10 70.1 61 57.4
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 3.4e-10 69.3 78 48.7
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 3.4e-10 69.3 60 61.7
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 4.4e-10 68.9 60 58.3
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 4.4e-10 68.9 64 56.2
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 5.8e-10 68.6 58 60.3
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 5.8e-10 68.6 59 57.6
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.8e-10 68.6 87 50.6
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 7.6e-10 68.2 72 50.0
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 9.9e-10 67.8 81 48.1
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 9.9e-10 67.8 57 61.4
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.3e-09 67.4 52 65.4
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.3e-09 67.4 51 60.8
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.3e-09 67.4 44 72.7
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 1.7e-09 67.0 40 80.0
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 1.7e-09 67.0 57 61.4
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.7e-09 67.0 56 55.4
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 1.7e-09 67.0 59 57.6
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 1.7e-09 67.0 65 56.9
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.2e-09 66.6 62 54.8
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 2.2e-09 66.6 62 54.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 2.2e-09 66.6 61 57.4
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.9e-09 66.2 53 56.6
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.9e-09 66.2 56 64.3
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 3.8e-09 65.9 50 60.0
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 3.8e-09 65.9 52 57.7
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 3.8e-09 65.9 74 45.9
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 4.9e-09 65.5 51 60.8
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 6.4e-09 65.1 45 68.9
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 8.4e-09 64.7 53 54.7
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 8.4e-09 64.7 53 54.7
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.1e-08 64.3 47 66.0
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 1.1e-08 64.3 57 59.6
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.4e-08 63.9 77 50.6
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.4e-08 63.9 57 59.6
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.4e-08 63.9 56 62.5
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 1.9e-08 63.5 69 49.3
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.9e-08 63.5 69 46.4
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.9e-08 63.5 68 48.5
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.4e-08 63.2 43 65.1
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 2.4e-08 63.2 43 67.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.2e-08 62.8 68 50.0
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.2e-08 62.8 68 48.5
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 7.1e-08 61.6 53 58.5
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.3e-08 61.2 53 56.6
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.3e-08 61.2 53 56.6
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.3e-08 61.2 53 56.6
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.2e-07 60.8 49 59.2
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.2e-07 60.8 67 46.3
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.7e-07 59.7 43 67.4
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.5e-07 59.3 37 70.3
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 3.5e-07 59.3 42 64.3
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 6.0e-07 58.5 57 57.9
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.0e-06 57.8 60 53.3


User provided reference genes

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