Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.7e-191 672.5 353 100.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 6.1e-189 664.1 354 99.2
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.8e-188 662.5 354 98.9
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 4.4e-187 657.9 354 98.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 4.4e-187 657.9 354 98.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 6.5e-183 644.0 354 96.0
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.0e-179 632.5 353 93.8
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.2e-178 629.0 353 93.8
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.9e-175 618.6 356 91.9
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 5.5e-174 614.4 353 91.8
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.5e-171 606.3 353 90.7
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-170 603.2 354 93.2
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.1e-169 600.1 331 94.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.3e-167 593.2 363 86.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 5.6e-158 561.2 353 83.9
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.5e-150 535.8 344 81.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 4.7e-149 531.6 336 81.2
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 4.0e-148 528.5 336 81.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.6e-147 525.8 349 78.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.6e-147 525.8 352 78.4
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.7e-146 523.1 352 77.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 2.2e-146 522.7 354 76.6
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.2e-146 522.7 315 84.1
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.9e-146 522.3 336 79.8
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 2.9e-146 522.3 338 79.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.7e-146 521.9 343 77.6
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.7e-146 521.9 353 75.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 4.9e-146 521.5 352 77.0
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.1e-145 520.4 353 77.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.1e-145 520.4 337 81.0
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.4e-145 520.0 336 79.8
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-145 519.2 338 79.0
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 9.2e-145 517.3 336 79.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.6e-144 516.5 352 77.8
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 4.6e-144 515.0 354 75.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.0e-144 514.6 354 76.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 6.0e-144 514.6 352 77.6
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 6.0e-144 514.6 336 78.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 7.8e-144 514.2 336 79.5
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.0e-143 513.8 336 79.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.3e-143 512.7 336 78.0
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 3.9e-143 511.9 338 78.4
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 6.6e-143 511.1 341 77.4
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.1e-142 510.4 353 76.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.5e-142 510.0 336 78.3
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.9e-142 509.6 342 78.7
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 4.3e-142 508.4 337 78.6
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 4.3e-142 508.4 353 76.2
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 5.6e-142 508.1 316 82.6
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.6e-142 508.1 349 77.1
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 7.3e-142 507.7 354 75.4
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 3.6e-141 505.4 331 78.5
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 8.1e-141 504.2 337 78.9
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 8.1e-141 504.2 336 77.7
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.1e-140 502.3 337 78.3
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.0e-140 501.9 359 75.2
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 4.0e-140 501.9 336 77.7
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.0e-140 501.9 316 81.0
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.2e-140 501.5 349 75.6
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.8e-140 501.1 405 68.4
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.9e-140 500.7 370 72.7
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 8.9e-140 500.7 336 77.7
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.5e-139 500.0 336 77.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-139 498.4 358 74.3
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 4.4e-139 498.4 336 76.2
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.8e-139 498.0 336 75.9
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 9.8e-139 497.3 345 75.4
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.3e-138 496.9 336 75.6
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.9e-138 495.7 313 80.8
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 4.9e-138 495.0 316 79.1
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 8.3e-138 494.2 363 73.0
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.2e-137 492.3 358 73.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.7e-136 489.2 311 80.1
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-135 487.3 376 70.2
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 8.6e-135 484.2 311 78.8
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 4.3e-134 481.9 311 78.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.2e-133 480.3 313 77.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.4e-131 471.9 347 70.9
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 6.4e-130 468.0 339 70.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.4e-129 466.8 353 70.8
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.9e-129 466.5 354 70.6
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.1e-128 463.0 304 79.3
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.1e-128 463.0 352 71.9
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.6e-128 461.8 289 82.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.0e-127 459.1 322 74.8
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 5.1e-127 458.4 320 73.4
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 7.3e-126 454.5 335 70.7
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 6.2e-125 451.4 307 77.5
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.2e-125 451.4 345 69.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 4.9e-122 441.8 331 71.3
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.9e-121 439.9 350 68.6
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 7.3e-118 427.9 318 68.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.3e-117 427.2 301 73.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.3e-117 427.2 403 61.3
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.2e-115 420.6 293 75.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 5.8e-115 418.3 312 70.8
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.3e-114 417.2 313 67.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 4.2e-113 412.1 336 67.0
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.5e-112 409.1 353 64.9
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 7.9e-112 407.9 345 65.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 4.3e-110 402.1 335 64.5
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.6e-104 383.6 242 81.4
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.7e-103 377.9 255 74.9
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 3.1e-92 342.8 221 79.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.4e-91 339.3 216 79.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 8.5e-90 334.7 318 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.7e-83 311.6 230 68.3
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 5.0e-82 308.9 312 54.5
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 9.4e-81 304.7 308 54.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.2e-75 287.7 192 76.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 7.7e-75 285.0 187 78.1
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 6.1e-72 275.4 220 65.9
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.8e-69 265.8 214 66.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.1e-65 254.6 336 48.2
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 7.5e-62 241.9 166 75.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.5e-57 225.7 286 47.6
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.0e-55 221.5 243 58.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.6e-54 216.9 151 72.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.5e-49 200.3 160 65.6
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.4e-47 194.5 148 66.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.6e-40 171.0 150 58.7
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.0e-39 166.4 280 36.1
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.9e-37 159.5 111 67.6
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.8e-36 157.5 266 41.4
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-35 153.7 113 68.1
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.7e-32 142.9 261 37.9
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 7.5e-30 135.6 145 56.6
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.2e-28 128.6 85 70.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 4.6e-27 126.3 101 69.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.2e-22 111.7 106 58.5
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 5.8e-22 109.4 75 73.3
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.2e-20 102.1 60 81.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.1e-18 96.3 88 63.6
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 6.6e-18 95.9 55 87.3
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.6e-18 95.9 108 52.8
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.5e-17 94.0 53 81.1
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-17 93.6 56 87.5
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.2e-16 89.4 113 46.9
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 7.6e-14 82.4 60 70.0
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.0e-10 72.0 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-09 67.4 64 57.8
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 9.0e-07 58.9 52 61.5


User provided reference genes

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