Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p49370 Brassica napus HOM05D001044 ORTHO05D015489 2.3e-64 248.8 131 100.0
BcaC01g06819 Brassica carinata HOM05D001044 ORTHO05D015489 2.4e-45 185.7 116 87.9
BcaB02g08037 Brassica carinata HOM05D001044 ORTHO05D006993 4.9e-43 177.9 111 84.7
Sp7g05800 Schrenkiella parvula HOM05D001044 ORTHO05D006993 2.4e-42 175.6 112 85.7
C04p43670 Brassica napus HOM05D001044 ORTHO05D006993 5.1e-40 167.9 110 84.5
BcaC02g09519 Brassica carinata HOM05D001044 ORTHO05D006993 1.1e-39 166.8 110 83.6
BolC4t25948H Brassica oleracea HOM05D001044 ORTHO05D006993 1.1e-39 166.8 110 83.6
Thhalv10004689m.g Eutrema salsugineum HOM05D001044 ORTHO05D006993 1.3e-38 163.3 111 80.2
C08p19380 Brassica napus HOM05D001044 ORTHO05D015489 3.6e-38 161.8 84 96.4
CARHR216450 Cardamine hirsuta HOM05D001044 ORTHO05D006993 1.1e-37 160.2 113 79.6
BraA04t16686Z Brassica rapa HOM05D001044 ORTHO05D006993 1.4e-37 159.8 110 82.7
A04p10190 Brassica napus HOM05D001044 ORTHO05D006993 1.8e-37 159.5 110 82.7
Aa31LG9G17820 Aethionema arabicum HOM05D001044 ORTHO05D006993 4.0e-37 158.3 114 77.2
AL7G45260 Arabidopsis lyrata HOM05D001044 ORTHO05D006993 3.4e-36 155.2 114 77.2
BcaB06g27030 Brassica carinata HOM05D001044 ORTHO05D006993 2.2e-35 152.5 110 77.3
Carub.0007s3194 Capsella rubella HOM05D001044 ORTHO05D006993 3.8e-35 151.8 113 76.1
BcaNung05709 Brassica carinata HOM05D001044 ORTHO05D015489 1.4e-34 149.8 85 92.9
C03p45650 Brassica napus HOM05D001044 ORTHO05D015489 1.4e-34 149.8 85 92.9
BolC2t11023H Brassica oleracea HOM05D001044 ORTHO05D015489 2.4e-34 149.1 81 96.3
AT5G36290 Arabidopsis thaliana HOM05D001044 ORTHO05D006993 1.2e-33 146.7 114 72.8
BcaC03g17024 Brassica carinata HOM05D001044 ORTHO05D015489 2.7e-33 145.6 77 97.4
THA.LOC104805697 Tarenaya hassleriana HOM05D001044 ORTHO05D006993 2.8e-30 135.6 121 67.8
THA.LOC104823812 Tarenaya hassleriana HOM05D001044 ORTHO05D006993 1.5e-28 129.8 121 62.8
C03p38610 Brassica napus HOM05D001044 ORTHO05D015489 1.3e-27 126.7 78 89.7
BcaC01g03348 Brassica carinata HOM05D001044 ORTHO05D015489 1.7e-27 126.3 73 90.4
BolC3t16134H Brassica oleracea HOM05D001044 ORTHO05D015489 3.8e-27 125.2 78 88.5
Cpa.g.sc39.1 Carica papaya HOM05D001044 ORTHO05D006993 2.4e-26 122.5 133 56.4
Atru.chr12.1793 Acer truncatum HOM05D001044 ORTHO05D006993 2.1e-25 119.4 113 61.9
EL10Ac4g09975 Beta vulgaris HOM05D001044 ORTHO05D006993 4.3e-23 111.7 109 63.3
COL.COLO4_27386 Corchorus olitorius HOM05D001044 ORTHO05D006993 7.4e-23 110.9 115 58.3
Thecc.05G199900 Theobroma cacao HOM05D001044 ORTHO05D006993 3.7e-22 108.6 116 58.6
Gohir.D11G320000 Gossypium hirsutum HOM05D001044 ORTHO05D006993 6.2e-22 107.8 115 57.4
Gorai.007G350200 Gossypium raimondii HOM05D001044 ORTHO05D006993 8.1e-22 107.5 115 57.4
Duzib177G0876 Durio zibethinus HOM05D001044 ORTHO05D006993 1.1e-21 107.1 115 54.8
Duzib106G1207 Durio zibethinus HOM05D001044 ORTHO05D006993 1.4e-21 106.7 115 55.7
Ciclev10012397m.g Citrus clementina HOM05D001044 ORTHO05D006993 4.0e-21 105.1 110 59.1
CSS0016478 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D006993 5.3e-21 104.8 107 59.8
Glyma.18G241400 Glycine max HOM05D001044 ORTHO05D006993 5.3e-21 104.8 109 58.7
Glyma.09G251100 Glycine max HOM05D001044 ORTHO05D006993 1.2e-20 103.6 109 57.8
Gohir.A11G304600 Gossypium hirsutum HOM05D001044 ORTHO05D006993 1.2e-20 103.6 119 54.6
TWI18G0428 Tripterygium wilfordii HOM05D001044 ORTHO05D006993 1.5e-20 103.2 105 58.1
CANSAT54G0917 Cannabis sativa HOM05D001044 ORTHO05D006993 2.0e-20 102.8 114 57.9
Hund21898 Selenicereus undatus HOM05D001044 ORTHO05D006993 2.0e-20 102.8 110 59.1
FAN02G2451 Fragaria x ananassa HOM05D001044 ORTHO05D006993 2.6e-20 102.4 111 57.7
FAN05G0602 Fragaria x ananassa HOM05D001044 ORTHO05D006993 3.4e-20 102.1 111 57.7
Phvul.008G054700 Phaseolus vulgaris HOM05D001044 ORTHO05D006993 3.4e-20 102.1 109 56.9
Haze_04546 Corylus avellana HOM05D001044 ORTHO05D006993 4.5e-20 101.7 113 59.3
Actinidia34781 Actinidia chinensis HOM05D001044 ORTHO05D006993 5.8e-20 101.3 93 65.6
FvH4_6g00560 Fragaria vesca HOM05D001044 ORTHO05D006993 5.8e-20 101.3 111 56.8
FAN14G0902 Fragaria x ananassa HOM05D001044 ORTHO05D006993 5.8e-20 101.3 111 56.8
TWI36G0022 Tripterygium wilfordii HOM05D001044 ORTHO05D006993 1.0e-19 100.5 105 57.1
FAN09G4672 Fragaria x ananassa HOM05D000001 ORTHO05D010091 1.3e-19 100.1 111 55.9
Oeu040499.1 Olea europaea HOM05D001044 ORTHO05D006993 2.2e-19 99.4 114 58.8
RcHm_v2.0_Chr3g0447951 Rosa chinensis HOM05D001044 ORTHO05D006993 2.2e-19 99.4 108 57.4
Cc09_g03560 Coffea canephora HOM05D001044 ORTHO05D006993 2.9e-19 99.0 114 57.9
Oeu010159.1 Olea europaea HOM05D001044 ORTHO05D006993 2.9e-19 99.0 115 58.3
VMungo1383G1540 Vigna mungo HOM05D001044 ORTHO05D006993 2.9e-19 99.0 91 60.4
Nitab4.5_0002233g0040 Nicotiana tabacum HOM05D001044 ORTHO05D006993 3.8e-19 98.6 109 58.7
QL01p048543 Quercus lobata HOM05D001044 ORTHO05D006993 3.8e-19 98.6 108 57.4
Rhsim09G0129800 Rhododendron simsii HOM05D001044 ORTHO05D006993 3.8e-19 98.6 124 54.8
MSTRG.27387 Avicennia marina HOM05D001044 ORTHO05D006993 4.9e-19 98.2 110 57.3
Dinv06979 Davidia involucrata HOM05D001044 ORTHO05D006993 4.9e-19 98.2 112 56.2
MD12G1260000 Malus domestica HOM05D001044 ORTHO05D006993 8.4e-19 97.4 115 54.8
Peaxi162Scf00344g01310 Petunia axillaris HOM05D001044 ORTHO05D006993 8.4e-19 97.4 110 58.2
Sopen11g004670 Solanum pennellii HOM05D001044 ORTHO05D006993 8.4e-19 97.4 113 56.6
Dinv29108 Davidia involucrata HOM05D001044 ORTHO05D006993 1.1e-18 97.1 113 57.5
MD04G1244200 Malus domestica HOM05D001044 ORTHO05D006993 1.1e-18 97.1 115 55.7
Prupe.6G360700 Prunus persica HOM05D001044 ORTHO05D006993 1.4e-18 96.7 114 54.4
Sabra13G0077200 Salix brachista HOM05D001044 ORTHO05D006993 1.4e-18 96.7 113 55.8
Sc09g0001500 Simmondsia chinensis HOM05D001044 ORTHO05D006993 1.4e-18 96.7 106 60.4
HanXRQChr16g0512051 Helianthus annuus HOM05D001044 ORTHO05D006993 1.9e-18 96.3 112 55.4
Lsat_1_v5_gn_8_2141 Lactuca sativa HOM05D001044 ORTHO05D006993 1.9e-18 96.3 115 54.8
Nitab4.5_0001308g0140 Nicotiana tabacum HOM05D001044 ORTHO05D006993 1.9e-18 96.3 109 56.9
Potri.013G086700 Populus trichocarpa HOM05D001044 ORTHO05D006993 1.9e-18 96.3 109 55.0
Eucgr.H01386 Eucalyptus grandis HOM05D001044 ORTHO05D006993 2.5e-18 95.9 99 54.5
SalBow1G6469 Salvia bowleyana HOM05D001044 ORTHO05D006993 2.5e-18 95.9 111 55.0
CAN.G1177.13 Capsicum annuum HOM05D001044 ORTHO05D006993 3.2e-18 95.5 112 57.1
CiPaw.01G093000 Carya illinoinensis HOM05D001044 ORTHO05D006993 3.2e-18 95.5 107 57.9
Lj1A1227G89 Lonicera japonica HOM05D001044 ORTHO05D006993 4.2e-18 95.1 106 55.7
Peaxi162Scf00253g00073 Petunia axillaris HOM05D001044 ORTHO05D006993 4.2e-18 95.1 106 59.4
Hund07341 Selenicereus undatus HOM05D001044 ORTHO05D006993 4.2e-18 95.1 105 59.0
Solyc11g008890.2 Solanum lycopersicum HOM05D001044 ORTHO05D006993 4.2e-18 95.1 113 55.8
Lalb_Chr01g0020341 Lupinus albus HOM05D001044 ORTHO05D006993 5.5e-18 94.7 100 59.0
Psat3g138560 Pisum sativum HOM05D001044 ORTHO05D006993 5.5e-18 94.7 108 49.1
Ca_07976_v3 Cicer arietinum L. HOM05D001044 ORTHO05D006993 9.3e-18 94.0 108 48.1
CsaV3_2G009660 Cucumis sativus L. HOM05D001044 ORTHO05D006993 9.3e-18 94.0 117 49.6
ECA232G1713 Erigeron canadensis HOM05D002771 ORTHO05D003078 9.3e-18 94.0 111 55.9
Os11g0472500 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D006993 9.3e-18 94.0 108 52.8
PGR031G0917 Punica granatum HOM05D001044 ORTHO05D006993 9.3e-18 94.0 104 57.7
Sed0003335 Sechium edule HOM05D001044 ORTHO05D006993 9.3e-18 94.0 115 52.2
Medtr7g079850 Medicago truncatula HOM05D001044 ORTHO05D006993 1.2e-17 93.6 108 48.1
Potri.019G053400 Populus trichocarpa HOM05D001044 ORTHO05D006993 1.2e-17 93.6 102 60.8
PGSC0003DMG400016166 Solanum tuberosum HOM05D001044 ORTHO05D006993 1.2e-17 93.6 112 54.5
Migut.F01875 Erythranthe guttata HOM05D001044 ORTHO05D006993 1.6e-17 93.2 111 55.0
Manes.12G006250 Manihot esculenta HOM05D001044 ORTHO05D006993 1.6e-17 93.2 107 57.0
vmacro10407 Vaccinium macrocarpon HOM05D001044 ORTHO05D006993 1.6e-17 93.2 107 56.1
TPR.G30354 Trifolium pratense HOM05D001044 ORTHO05D006993 2.1e-17 92.8 130 46.9
Lsat_1_v5_gn_9_48781 Lactuca sativa HOM05D001044 ORTHO05D006993 2.7e-17 92.4 112 55.4
MSTRG.327 Avicennia marina HOM05D001044 ORTHO05D006993 3.5e-17 92.0 115 54.8
Lj1g0004654 Lotus japonicus HOM05D001044 ORTHO05D006993 3.5e-17 92.0 109 52.3
Oeu023164.2 Olea europaea HOM05D001044 ORTHO05D006993 3.5e-17 92.0 100 58.0
TAR365G1064 Trochodendron aralioides HOM05D001044 ORTHO05D006993 3.5e-17 92.0 109 53.2
Zm00001eb169910 Zea mays HOM05D001044 ORTHO05D006993 3.5e-17 92.0 94 57.4
Sed0016855 Sechium edule HOM05D001044 ORTHO05D006993 4.6e-17 91.7 111 49.5
Lalb_Chr19g0127601 Lupinus albus HOM05D001044 ORTHO05D006993 7.9e-17 90.9 108 53.7
arahy.Tifrunner.gnm1.ann1.5996BE Arachis hypogaea HOM05D001044 ORTHO05D006993 1.0e-16 90.5 109 51.4
ClCG11G010760 Citrullus lanatus HOM05D001044 ORTHO05D006993 1.0e-16 90.5 111 48.6
Nitab4.5_0001653g0130 Nicotiana tabacum HOM05D001044 ORTHO05D006993 1.0e-16 90.5 96 61.5
MSTRG.8214 Avicennia marina HOM05D001044 ORTHO05D006993 1.8e-16 89.7 121 49.6
Nitab4.5_0006595g0020 Nicotiana tabacum HOM05D001044 ORTHO05D006993 1.8e-16 89.7 96 59.4
arahy.Tifrunner.gnm1.ann1.MJZV2I Arachis hypogaea HOM05D001044 ORTHO05D006993 5.1e-16 88.2 109 50.5
CSS0007646 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D006993 5.1e-16 88.2 92 57.6
PSO017G2931 Papaver somniferum HOM05D001044 ORTHO05D006993 5.1e-16 88.2 132 49.2
PSO675G0244 Papaver somniferum HOM05D001044 ORTHO05D010091 5.1e-16 88.2 127 48.0
GSVIVG01019117001 Vitis vinifera HOM05D001044 ORTHO05D006993 1.1e-15 87.0 96 58.3
Aqoxy2G04066 Aquilegia oxysepala HOM05D001044 ORTHO05D006993 1.5e-15 86.7 122 49.2
unitig_26.g9569 Utricularia gibba HOM05D001044 ORTHO05D006993 2.5e-15 85.9 61 75.4
CDE05G0882 Ceratophyllum demersum HOM05D001044 ORTHO05D006993 3.3e-15 85.5 123 49.6
DCAR_023853 Daucus carota HOM05D001044 ORTHO05D006993 4.3e-15 85.1 123 48.8
Nn1g09810 Nelumbo nucifera HOM05D001044 ORTHO05D006993 4.3e-15 85.1 73 65.8
SGA_v2.0_scaffold62G21506 Striga asiatica HOM05D001044 ORTHO05D006993 4.3e-15 85.1 125 52.8
A07p13580 Brassica napus HOM05D001044 ORTHO05D015489 1.3e-14 83.6 44 95.5
C08p15320 Brassica napus HOM05D001044 ORTHO05D015489 1.3e-14 83.6 44 95.5
unitig_749.g13504 Utricularia gibba HOM05D001044 ORTHO05D006993 1.3e-14 83.6 61 72.1
CDE05G0724 Ceratophyllum demersum HOM05D001044 ORTHO05D006993 2.8e-14 82.4 110 47.3
Os08g0528500 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D006993 2.8e-14 82.4 63 71.4
ATR1147G024 Amborella trichopoda HOM05D001044 ORTHO05D006993 6.3e-14 81.3 125 43.2
HPP92_020207 Vanilla planifolia HOM05D001044 ORTHO05D006993 1.4e-13 80.1 100 50.0
SEGI_17978 Sequoiadendron giganteum HOM05D001044 ORTHO05D006993 1.8e-13 79.7 109 49.5
SEGI_37828 Sequoiadendron giganteum HOM05D001044 ORTHO05D006993 1.8e-13 79.7 109 49.5
Lsat_1_v5_gn_2_106141 Lactuca sativa HOM05D001044 ORTHO05D006993 5.3e-13 78.2 51 78.4
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 5.3e-13 78.2 51 78.4
Lsat_1_v5_gn_8_55881 Lactuca sativa HOM05D001044 ORTHO05D006993 5.3e-13 78.2 51 78.4
Zm00001eb036320 Zea mays HOM05D001044 ORTHO05D006993 6.9e-13 77.8 51 78.4
SMO367G1059 Selaginella moellendorffii HOM05D001044 ORTHO05D006993 1.2e-12 77.0 51 76.5
Solyc09g015440.1 Solanum lycopersicum HOM05D001044 ORTHO05D006993 1.2e-12 77.0 106 52.8
Pp3c24_6730 Physcomitrium patens HOM05D001044 ORTHO05D006993 4.5e-12 75.1 121 45.5
Pp3c8_14760 Physcomitrium patens HOM05D001044 ORTHO05D006993 7.6e-12 74.3 90 52.2
Mapoly0030s0088 Marchantia polymorpha HOM05D001044 ORTHO05D006993 5.0e-11 71.6 51 72.5
HPP92_020218 Vanilla planifolia HOM05D001044 ORTHO05D006993 4.2e-10 68.6 44 81.8
MCO03G382 Micromonas commoda HOM05D001044 ORTHO05D006993 5.5e-10 68.2 48 75.0
PRCOL_00006182 Prasinoderma coloniale HOM05D001044 ORTHO05D006993 9.3e-10 67.4 46 71.7
Actinidia38901 Actinidia chinensis HOM05D001044 ORTHO05D006993 2.1e-09 66.2 71 57.7
CBR_g36743 Chara braunii HOM05D001044 ORTHO05D006993 3.0e-08 62.4 48 62.5
Cfa026150 Carpinus fangiana HOM05D001044 ORTHO05D006993 3.9e-08 62.0 49 61.2
AUR62006663 Chenopodium quinoa HOM05D000795 ORTHO05D006993 3.9e-08 62.0 102 47.1
Mapoly0093s0014 Marchantia polymorpha HOM05D001044 ORTHO05D004551 1.1e-07 60.5 50 60.0
AUR62000318 Chenopodium quinoa HOM05D000795 ORTHO05D000706 1.9e-07 59.7 76 53.9
Sopen09g009140 Solanum pennellii HOM05D001044 ORTHO05D006993 2.5e-07 59.3 101 45.5
SMO119G0381 Selaginella moellendorffii HOM05D001044 ORTHO05D004551 2.8e-06 55.8 50 54.0
Cre17.g731300 Chlamydomonas reinhardtii HOM05D001044 ORTHO05D004551 3.7e-06 55.5 46 58.7
Nn4g23760 Nelumbo nucifera HOM05D001044 ORTHO05D004551 6.3e-06 54.7 50 50.0
SEGI_01168 Sequoiadendron giganteum HOM05D001044 ORTHO05D004551 6.3e-06 54.7 50 50.0
SEGI_20026 Sequoiadendron giganteum HOM05D001044 ORTHO05D004551 8.2e-06 54.3 50 50.0


User provided reference genes

Program Settings