Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p49250 Brassica napus HOM05D000117 ORTHO05D009164 2.5e-36 154.8 73 100.0
BolC2t11014H Brassica oleracea HOM05D000117 ORTHO05D009164 2.5e-36 154.8 73 100.0
BcaC03g17016 Brassica carinata HOM05D000117 ORTHO05D009164 7.5e-25 116.7 57 100.0
Thhalv10001036m.g Eutrema salsugineum HOM05D000117 ORTHO05D009164 6.6e-21 103.6 91 59.3
Sp2g12660 Schrenkiella parvula HOM05D000117 ORTHO05D009164 1.9e-20 102.1 91 59.3
BcaC06g31325 Brassica carinata HOM05D000117 ORTHO05D009164 4.0e-18 94.4 92 58.7
CARHR143750 Cardamine hirsuta HOM05D000117 ORTHO05D009164 1.2e-17 92.8 91 54.9
A06p44570 Brassica napus HOM05D000117 ORTHO05D009164 1.5e-17 92.4 92 57.6
BcaC06g34209 Brassica carinata HOM05D000117 ORTHO05D009164 5.7e-17 90.5 92 55.4
C07p31650 Brassica napus HOM05D000117 ORTHO05D009164 5.7e-17 90.5 92 55.4
BolC7t43704H Brassica oleracea HOM05D000117 ORTHO05D009164 5.7e-17 90.5 92 55.4
BraA06t27331Z Brassica rapa HOM05D000117 ORTHO05D009164 7.5e-17 90.1 92 55.4
Carub.0005s0018 Capsella rubella HOM05D000117 ORTHO05D009164 1.3e-16 89.4 94 50.0
AT2G01200 Arabidopsis thaliana HOM05D000117 ORTHO05D009164 6.3e-16 87.0 91 50.5
AL5G10150 Arabidopsis lyrata HOM05D000117 ORTHO05D009164 8.3e-16 86.7 91 50.5
Aa31LG2G8690 Aethionema arabicum HOM05D000117 ORTHO05D009164 4.6e-14 80.9 81 51.9
AT1G15050 Arabidopsis thaliana HOM05D000117 ORTHO05D009164 2.3e-10 68.6 84 45.2
THA.LOC104805061 Tarenaya hassleriana HOM05D000117 ORTHO05D009164 5.2e-10 67.4 90 41.1
AL1G27120 Arabidopsis lyrata HOM05D000117 ORTHO05D009164 1.2e-09 66.2 84 45.2
Carub.0001s1482 Capsella rubella HOM05D000117 ORTHO05D009164 2.0e-09 65.5 85 43.5
CARHR015590 Cardamine hirsuta HOM05D000117 ORTHO05D009164 2.6e-09 65.1 83 42.2
CANSAT01G1048 Cannabis sativa HOM05D000117 ORTHO05D009164 7.5e-09 63.5 81 37.0
Peaxi162Scf00179g00059 Petunia axillaris HOM05D000117 ORTHO05D009164 7.5e-09 63.5 56 48.2
TWI31G0022 Tripterygium wilfordii HOM05D000117 ORTHO05D009164 7.5e-09 63.5 81 39.5
Cfa015835 Carpinus fangiana HOM05D000117 ORTHO05D009164 9.8e-09 63.2 81 38.3
Haze_00656 Corylus avellana HOM05D000117 ORTHO05D009164 9.8e-09 63.2 81 38.3
COL.COLO4_32136 Corchorus olitorius HOM05D000117 ORTHO05D009164 1.3e-08 62.8 81 40.7
Potri.010G119900 Populus trichocarpa HOM05D000117 ORTHO05D009164 1.3e-08 62.8 81 38.3
BraA06t24287Z Brassica rapa HOM05D000117 ORTHO05D009164 1.7e-08 62.4 93 38.7
Manes.14G107100 Manihot esculenta HOM05D000117 ORTHO05D009164 2.2e-08 62.0 81 38.3
QL01p010717 Quercus lobata HOM05D000117 ORTHO05D009164 2.2e-08 62.0 81 38.3
QL01p010790 Quercus lobata HOM05D000117 ORTHO05D009164 2.2e-08 62.0 81 38.3
A06p11070 Brassica napus HOM05D000117 ORTHO05D009164 2.9e-08 61.6 93 38.7
CiPaw.05G242800 Carya illinoinensis HOM05D000117 ORTHO05D009164 2.9e-08 61.6 81 40.7
Glyma.20G120800 Glycine max HOM05D000117 ORTHO05D009164 2.9e-08 61.6 81 37.0
Lj5g0009810 Lotus japonicus HOM05D000117 ORTHO05D009164 2.9e-08 61.6 81 35.8
Lj5g0024280 Lotus japonicus HOM05D000117 ORTHO05D009164 2.9e-08 61.6 81 35.8
TPR.G4942 Trifolium pratense HOM05D000117 ORTHO05D009164 2.9e-08 61.6 81 35.8
VMungo0720G0361 Vigna mungo HOM05D000117 ORTHO05D009164 2.9e-08 61.6 82 37.8
C05p13200 Brassica napus HOM05D000117 ORTHO05D009164 3.7e-08 61.2 93 38.7
BolC5t30056H Brassica oleracea HOM05D000117 ORTHO05D009164 3.7e-08 61.2 93 38.7
Phvul.007G032200 Phaseolus vulgaris HOM05D000117 ORTHO05D009164 3.7e-08 61.2 81 37.0
SGA_v2.0_scaffold4436G54489 Striga asiatica HOM05D000117 ORTHO05D009164 3.7e-08 61.2 95 35.8
Glyma.10G270500 Glycine max HOM05D000117 ORTHO05D009164 4.9e-08 60.8 81 37.0
Lalb_Chr02g0145741 Lupinus albus HOM05D000117 ORTHO05D009164 4.9e-08 60.8 81 37.0
Migut.E00371 Erythranthe guttata HOM05D000117 ORTHO05D009164 6.4e-08 60.5 81 35.8
BcaB02g06570 Brassica carinata HOM05D000117 ORTHO05D009164 8.3e-08 60.1 79 43.0
Dinv31594 Davidia involucrata HOM05D000117 ORTHO05D009164 8.3e-08 60.1 81 38.3
FAN17G0021 Fragaria x ananassa HOM05D000117 ORTHO05D009164 8.3e-08 60.1 81 35.8
Prupe.1G317000 Prunus persica HOM05D000117 ORTHO05D009164 8.3e-08 60.1 81 33.3
RcHm_v2.0_Chr4g0434391 Rosa chinensis HOM05D000117 ORTHO05D009164 8.3e-08 60.1 81 35.8
GSVIVG01011841001 Vitis vinifera HOM05D000117 ORTHO05D009164 8.3e-08 60.1 81 38.3
FvH4_4g26700 Fragaria vesca HOM05D000117 ORTHO05D009164 1.1e-07 59.7 81 35.8
FAN12G1438 Fragaria x ananassa HOM05D000117 ORTHO05D009164 1.1e-07 59.7 81 35.8
FAN12G1479 Fragaria x ananassa HOM05D000117 ORTHO05D009164 1.1e-07 59.7 81 35.8
Ca_06891_v3 Cicer arietinum L. HOM05D000117 ORTHO05D009164 1.4e-07 59.3 81 34.6
DCAR_023629 Daucus carota HOM05D002719 ORTHO05D002938 1.4e-07 59.3 81 35.8
Psat6g224280 Pisum sativum HOM05D000117 ORTHO05D009164 1.4e-07 59.3 81 37.0
BcaNung05768 Brassica carinata HOM05D000117 ORTHO05D009164 1.9e-07 58.9 61 52.5
DCAR_026749 Daucus carota HOM05D000117 ORTHO05D009164 1.9e-07 58.9 81 33.3
Lj6A753T53 Lonicera japonica HOM05D000117 ORTHO05D009164 1.9e-07 58.9 81 34.6
SalBow8G0779 Salvia bowleyana HOM05D000117 ORTHO05D009164 1.9e-07 58.9 93 33.3
MELO3C012276.2 Cucumis melo HOM05D000117 ORTHO05D009164 2.4e-07 58.5 79 38.0
CsaV3_5G034610 Cucumis sativus L. HOM05D000117 ORTHO05D009164 2.4e-07 58.5 79 38.0
Sabra10G0090200 Salix brachista HOM05D000117 ORTHO05D009164 2.4e-07 58.5 81 35.8
arahy.Tifrunner.gnm1.ann1.6B28AS Arachis hypogaea HOM05D000117 ORTHO05D009164 3.2e-07 58.2 81 33.3
arahy.Tifrunner.gnm1.ann1.M3JKN9 Arachis hypogaea HOM05D000117 ORTHO05D009164 3.2e-07 58.2 81 33.3
Aqoxy3G00196 Aquilegia oxysepala HOM05D000117 ORTHO05D009164 4.1e-07 57.8 81 39.5
Duzib268G1422 Durio zibethinus HOM05D000117 ORTHO05D009164 4.1e-07 57.8 94 37.2
MBI16_g44829_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D009164 4.1e-07 57.8 81 38.3
Oeu045609.2 Olea europaea HOM05D000117 ORTHO05D009164 4.1e-07 57.8 81 37.0
MD13G1035200 Malus domestica HOM05D000117 ORTHO05D009164 5.4e-07 57.4 81 35.8
Cpa.g.sc65.69 Carica papaya HOM05D000117 ORTHO05D009164 7.0e-07 57.0 71 43.7
Gohir.D05G324300 Gossypium hirsutum HOM05D000117 ORTHO05D009164 7.0e-07 57.0 86 37.2
Sed0026108 Sechium edule HOM05D000117 ORTHO05D009164 7.0e-07 57.0 93 37.6
Actinidia14923 Actinidia chinensis HOM05D000117 ORTHO05D009164 9.2e-07 56.6 92 32.6
AUR62014118 Chenopodium quinoa HOM05D000117 ORTHO05D009164 9.2e-07 56.6 81 33.3
Medtr1g109510 Medicago truncatula HOM05D000117 ORTHO05D009164 9.2e-07 56.6 81 34.6
Thecc.02G221700 Theobroma cacao HOM05D000117 ORTHO05D009164 9.2e-07 56.6 82 39.0
Gorai.009G348100 Gossypium raimondii HOM05D000117 ORTHO05D009164 1.2e-06 56.2 86 36.0
Hma1.2p1_0767F.1_g215520 Hydrangea macrophylla HOM05D000117 ORTHO05D009164 1.6e-06 55.8 81 37.0
Nitab4.5_0002112g0130 Nicotiana tabacum HOM05D000117 ORTHO05D009164 1.6e-06 55.8 82 34.1
CiPaw.06G016400 Carya illinoinensis HOM05D000117 ORTHO05D009164 2.7e-06 55.1 81 34.6
Cc11_g09650 Coffea canephora HOM05D000117 ORTHO05D009164 2.7e-06 55.1 80 33.8
Hund20742 Selenicereus undatus HOM05D000117 ORTHO05D009164 2.7e-06 55.1 91 31.9
Sopen05g004610 Solanum pennellii HOM05D000117 ORTHO05D009164 2.7e-06 55.1 80 31.2
CAN.G610.22 Capsicum annuum HOM05D000117 ORTHO05D009164 3.5e-06 54.7 80 31.2
AUR62002810 Chenopodium quinoa HOM05D000117 ORTHO05D009164 3.5e-06 54.7 81 32.1
Gohir.A05G322200 Gossypium hirsutum HOM05D000117 ORTHO05D009164 3.5e-06 54.7 86 34.9
Actinidia16685 Actinidia chinensis HOM05D000117 ORTHO05D009164 4.6e-06 54.3 91 30.8
Solyc05g008850.4 Solanum lycopersicum HOM05D000117 ORTHO05D009164 4.6e-06 54.3 80 31.2
vmacro10601 Vaccinium macrocarpon HOM05D000117 ORTHO05D009164 4.6e-06 54.3 81 32.1
Ciclev10016885m.g Citrus clementina HOM05D000117 ORTHO05D009164 6.0e-06 53.9 80 36.2


User provided reference genes

Program Settings