Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-190 669.1 348 100.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 8.4e-183 643.7 353 96.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.1e-179 633.3 351 94.6
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-177 626.7 349 95.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-177 625.2 349 94.8
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-173 612.1 350 92.0
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.9e-171 605.9 350 90.3
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 8.1e-170 600.5 346 91.0
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.8e-169 599.4 350 90.0
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.2e-168 596.7 348 88.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.5e-168 594.7 348 89.7
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.3e-167 593.2 352 88.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 2.9e-167 592.0 352 88.6
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 7.1e-166 587.4 352 89.5
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 3.8e-159 565.1 350 87.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.9e-158 562.8 350 86.9
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 6.9e-153 544.3 348 83.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.6e-152 542.3 350 84.0
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 6.3e-146 521.2 326 84.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 4.2e-142 508.4 367 75.7
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.1e-129 464.2 362 72.4
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.2e-128 463.8 362 72.4
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.0e-128 463.0 362 72.1
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.0e-128 463.0 360 72.2
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.5e-128 462.2 363 71.1
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.5e-126 456.1 351 70.1
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.7e-125 451.8 350 70.3
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-124 450.7 348 71.3
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.0e-124 450.7 363 70.0
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.4e-124 450.3 362 69.6
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-124 450.3 348 71.3
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 8.8e-124 447.6 351 70.7
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.8e-124 447.6 351 70.7
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.8e-124 447.6 351 70.7
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.5e-123 446.8 359 69.4
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.6e-123 446.0 274 84.7
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 5.7e-123 444.9 366 69.1
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 9.8e-123 444.1 366 69.1
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 9.8e-123 444.1 363 67.5
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 9.8e-123 444.1 293 81.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 69.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.7e-122 443.4 360 68.9
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.7e-122 443.4 297 78.8
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.7e-122 443.4 355 68.7
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.7e-122 443.4 312 77.6
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 3.7e-122 442.2 276 83.7
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.3e-122 441.4 369 68.0
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 8.3e-122 441.0 363 70.8
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.8e-121 439.9 310 74.8
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.4e-121 439.5 287 79.8
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 2.4e-121 439.5 291 79.4
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-121 439.1 278 83.5
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 5.4e-121 438.3 279 81.7
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.4e-121 438.3 297 78.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.4e-121 438.3 362 70.4
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.4e-121 438.3 279 81.4
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.0e-121 438.0 288 80.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 7.0e-121 438.0 313 71.9
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.0e-120 436.4 318 73.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.7e-120 436.0 287 79.1
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 4.5e-120 435.3 309 75.1
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 4.5e-120 435.3 360 67.2
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 4.5e-120 435.3 295 78.0
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 5.9e-120 434.9 277 81.9
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.9e-120 434.9 295 77.6
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 7.7e-120 434.5 315 72.7
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 7.7e-120 434.5 279 80.3
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 7.7e-120 434.5 269 82.5
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 7.7e-120 434.5 269 82.5
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.0e-119 434.1 356 68.0
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 319 72.1
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.3e-119 433.7 275 80.7
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.2e-119 433.0 358 67.9
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-119 433.0 357 67.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 3.8e-119 432.2 278 81.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 5.0e-119 431.8 290 80.0
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.5e-119 431.4 295 77.6
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 6.5e-119 431.4 304 75.3
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-118 430.6 298 74.8
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-118 430.6 298 74.8
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.1e-118 430.6 290 79.3
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.1e-118 430.6 273 80.2
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.1e-118 430.6 279 78.9
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.5e-118 429.5 363 66.4
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.2e-118 429.1 359 68.0
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 4.2e-118 428.7 253 85.8
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 4.2e-118 428.7 351 68.9
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 5.5e-118 428.3 290 78.6
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.2e-117 427.2 285 78.6
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.6e-117 426.8 288 77.1
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.6e-117 426.8 279 79.6
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.7e-117 426.0 278 81.7
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 3.6e-117 425.6 252 87.3
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 3.6e-117 425.6 290 76.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 4.7e-117 425.2 359 68.0
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 6.1e-117 424.9 359 67.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.0e-117 424.5 299 74.2
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.0e-116 424.1 256 84.0
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.0e-116 424.1 250 85.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.0e-116 424.1 359 67.4
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.0e-116 424.1 359 67.7
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 5.2e-116 421.8 352 68.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 5.2e-116 421.8 279 79.2
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.2e-115 420.6 363 65.8
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.2e-115 420.6 327 69.7
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.5e-115 420.2 299 73.9
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.0e-115 419.9 362 65.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.6e-115 419.5 358 66.2
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.6e-115 419.5 326 69.0
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 3.4e-115 419.1 331 70.7
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.4e-115 418.7 291 73.9
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.2e-114 416.4 295 73.2
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 2.8e-114 416.0 363 66.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 8.3e-114 414.5 282 76.2
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.1e-113 414.1 362 66.0
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-113 413.3 262 79.0
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.4e-113 411.8 250 83.6
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.4e-113 411.8 312 71.2
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 4.5e-112 408.7 291 73.2
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.9e-111 406.0 356 64.6
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 3.8e-111 405.6 308 70.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.1e-109 399.8 377 61.3
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.0e-109 397.9 295 74.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.4e-108 397.1 327 67.3
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.5e-107 393.7 269 76.6
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.0e-107 393.3 287 71.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.6e-107 392.9 273 76.2
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 9.8e-107 391.0 225 88.0
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.2e-106 389.8 250 78.4
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 4.9e-106 388.7 272 75.0
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.6e-104 383.6 256 75.8
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 3.5e-104 382.5 243 79.4
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.3e-103 380.6 362 59.9
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 5.0e-103 378.6 272 72.8
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 7.5e-99 364.8 259 72.6
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.0e-95 354.4 284 63.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.8e-92 343.6 248 71.0
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.8e-92 341.7 324 60.8
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 6.4e-90 335.1 282 63.8
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-86 323.6 198 85.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.9e-86 323.6 236 73.7
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-83 313.5 198 83.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 4.3e-78 295.8 314 57.0
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-68 264.2 155 88.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.2e-67 261.2 163 84.7
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 4.8e-61 239.2 173 71.7
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.8e-47 194.1 108 93.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 4.6e-40 169.5 214 51.9
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.2e-37 158.7 99 82.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.6e-32 144.4 150 56.0
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 8.2e-29 132.1 238 44.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.2e-21 107.5 64 90.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 3.5e-19 100.1 61 83.6


User provided reference genes

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