Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p48830 Brassica napus HOM05D000297 ORTHO05D039976 4.0e-78 294.7 146 100.0
BcaC03g16983 Brassica carinata HOM05D000297 ORTHO05D039976 4.8e-55 218.0 106 100.0
A06p44870 Brassica napus HOM05D000297 ORTHO05D000193 4.1e-38 161.8 98 79.6
C07p31330 Brassica napus HOM05D000297 ORTHO05D000193 1.2e-37 160.2 122 69.7
BolC7t43674H Brassica oleracea HOM05D000297 ORTHO05D000193 1.2e-37 160.2 122 69.7
BcaC06g31351 Brassica carinata HOM05D000297 ORTHO05D000193 7.2e-35 151.0 80 91.2
Sp2g12380 Schrenkiella parvula HOM05D000297 ORTHO05D000193 3.3e-32 142.1 80 85.0
BcaC06g34233 Brassica carinata HOM05D000297 ORTHO05D000193 4.3e-32 141.7 80 86.2
Thhalv10001185m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 3.7e-31 138.7 80 83.8
CARHR173640 Cardamine hirsuta HOM05D000297 ORTHO05D000193 3.4e-29 132.1 80 78.8
Carub.0008s0011 Capsella rubella HOM05D000297 ORTHO05D000193 7.7e-29 131.0 80 78.8
AT5G47670 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 1.0e-28 130.6 83 78.3
AL8G10280 Arabidopsis lyrata HOM05D000297 ORTHO05D000193 1.7e-28 129.8 82 78.0
BcaC04g21608 Brassica carinata HOM05D000297 ORTHO05D000193 3.2e-27 125.6 80 77.5
C09p29910 Brassica napus HOM05D000297 ORTHO05D000193 3.2e-27 125.6 80 77.5
A09p23170 Brassica napus HOM05D000297 ORTHO05D000193 9.4e-27 124.0 80 77.5
BolC9t55854H Brassica oleracea HOM05D000297 ORTHO05D000193 4.7e-26 121.7 83 75.9
Aa31sc662G40 Aethionema arabicum HOM05D000297 ORTHO05D000193 1.4e-25 120.2 87 72.4
BraA09t37920Z Brassica rapa HOM05D000297 ORTHO05D000193 1.4e-25 120.2 83 75.9
BcaB07g30765 Brassica carinata HOM05D000297 ORTHO05D000193 9.1e-22 107.5 82 69.5
Gohir.A05G176400 Gossypium hirsutum HOM05D000297 ORTHO05D000193 2.2e-15 86.3 80 56.2
Gohir.D05G179300 Gossypium hirsutum HOM05D000297 ORTHO05D000193 6.3e-15 84.7 80 55.0
Gorai.009G184800 Gossypium raimondii HOM05D000297 ORTHO05D000193 6.3e-15 84.7 80 55.0
Glyma.17G005600 Glycine max HOM05D000297 ORTHO05D000193 1.4e-14 83.6 80 56.2
Duzib235G0506 Durio zibethinus HOM05D000297 ORTHO05D000193 1.8e-14 83.2 80 53.8
FvH4_3g11540 Fragaria vesca HOM05D000297 ORTHO05D000193 4.1e-14 82.0 83 56.6
Thecc.06G241100 Theobroma cacao HOM05D000297 ORTHO05D000193 5.3e-14 81.6 94 50.0
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.2e-13 80.5 84 53.6
Glyma.07G268100 Glycine max HOM05D000297 ORTHO05D000193 3.5e-13 79.0 84 57.1
FAN21G0413 Fragaria x ananassa HOM05D000297 ORTHO05D000193 4.5e-13 78.6 85 56.5
Cfa000037 Carpinus fangiana HOM05D000297 ORTHO05D000193 5.9e-13 78.2 81 54.3
QL05p067791 Quercus lobata HOM05D000297 ORTHO05D000193 5.9e-13 78.2 80 53.8
CANSAT56G3140 Cannabis sativa HOM05D000297 ORTHO05D000193 7.7e-13 77.8 80 55.0
Duzib192G1035 Durio zibethinus HOM05D000297 ORTHO05D000193 1.0e-12 77.4 80 52.5
COL.COLO4_31940 Corchorus olitorius HOM05D000297 ORTHO05D000193 1.3e-12 77.0 85 52.9
FvH4_3g00320 Fragaria vesca HOM05D000297 ORTHO05D000193 1.3e-12 77.0 85 55.3
Manes.08G068800 Manihot esculenta HOM05D000297 ORTHO05D000193 1.3e-12 77.0 86 50.0
VMungo1215G1927 Vigna mungo HOM05D000297 ORTHO05D000193 1.3e-12 77.0 80 56.2
Medtr4g133952 Medicago truncatula HOM05D000297 ORTHO05D000193 1.7e-12 76.6 80 55.0
Lsat_1_v5_gn_4_63880 Lactuca sativa HOM05D000297 ORTHO05D000193 2.9e-12 75.9 81 50.6
TPR.G5937 Trifolium pratense HOM05D000297 ORTHO05D000193 5.0e-12 75.1 89 52.8
Phvul.003G087000 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 1.1e-11 73.9 81 56.8
Psat0s2409g0040 Pisum sativum HOM05D000297 ORTHO05D000193 1.5e-11 73.6 77 55.8
CAN.G1156.20 Capsicum annuum HOM05D000297 ORTHO05D000193 1.9e-11 73.2 76 52.6
Lalb_Chr13g0304371 Lupinus albus HOM05D000297 ORTHO05D000193 1.9e-11 73.2 77 54.5
vmacro15730 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 1.9e-11 73.2 80 52.5
Potri.016G005600 Populus trichocarpa HOM05D000297 ORTHO05D000193 2.5e-11 72.8 80 53.8
Ciclev10016498m.g Citrus clementina HOM05D000297 ORTHO05D000193 3.2e-11 72.4 85 54.1
GSVIVG01002895001 Vitis vinifera HOM05D000297 ORTHO05D000193 3.2e-11 72.4 87 49.4
MSTRG.7131 Avicennia marina HOM05D000297 ORTHO05D000193 4.2e-11 72.0 77 53.2
Potri.006G005000 Populus trichocarpa HOM05D000297 ORTHO05D000193 4.2e-11 72.0 78 53.8
arahy.Tifrunner.gnm1.ann1.CHFV0I Arachis hypogaea HOM05D000297 ORTHO05D000193 7.2e-11 71.2 81 48.1
Nn1g03170 Nelumbo nucifera HOM05D000297 ORTHO05D000193 7.2e-11 71.2 83 48.2
arahy.Tifrunner.gnm1.ann1.TAFY85 Arachis hypogaea HOM05D000297 ORTHO05D000193 2.1e-10 69.7 80 47.5
CAN.G1263.32 Capsicum annuum HOM05D000297 ORTHO05D000193 2.7e-10 69.3 82 46.3
SalBow7G3502 Salvia bowleyana HOM05D000297 ORTHO05D000193 2.7e-10 69.3 78 52.6
Atru.chr1.2259 Acer truncatum HOM05D000297 ORTHO05D000193 3.6e-10 68.9 51 68.6
HanXRQChr16g0515761 Helianthus annuus HOM05D000297 ORTHO05D000193 3.6e-10 68.9 84 51.2
THA.LOC104798377 Tarenaya hassleriana HOM05D000297 ORTHO05D000193 3.6e-10 68.9 83 49.4
PGR042G3268 Punica granatum HOM05D000297 ORTHO05D000193 4.7e-10 68.6 83 51.8
Solyc04g015060.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 4.7e-10 68.6 80 50.0
Sopen04g007080 Solanum pennellii HOM05D000297 ORTHO05D000193 4.7e-10 68.6 80 50.0
Sopen11g007490 Solanum pennellii HOM05D000297 ORTHO05D000193 4.7e-10 68.6 77 53.2
Actinidia39255 Actinidia chinensis HOM05D000297 ORTHO05D000193 6.1e-10 68.2 82 47.6
Lj4g0009958 Lotus japonicus HOM05D000297 ORTHO05D000193 8.0e-10 67.8 81 50.6
CDE10G0743 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 1.0e-09 67.4 80 45.0
CiPaw.10G081800 Carya illinoinensis HOM05D000297 ORTHO05D000193 1.8e-09 66.6 90 46.7
vmacro03609 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 1.8e-09 66.6 81 49.4
vmacro23226 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 1.8e-09 66.6 81 49.4
SalBow7G2386 Salvia bowleyana HOM05D000297 ORTHO05D000193 3.0e-09 65.9 78 51.3
CSS0026715 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 5.2e-09 65.1 54 64.8
CSS0035793 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 5.2e-09 65.1 54 64.8
Nitab4.5_0001296g0100 Nicotiana tabacum HOM05D000297 ORTHO05D000193 5.2e-09 65.1 56 60.7
FAN25G3538 Fragaria x ananassa HOM05D000297 ORTHO05D000193 6.7e-09 64.7 62 58.1
Lalb_Chr12g0195941 Lupinus albus HOM05D000297 ORTHO05D000193 6.7e-09 64.7 85 51.8
SGA_v2.0_scaffold7G03696 Striga asiatica HOM05D000297 ORTHO05D000193 6.7e-09 64.7 79 50.6
AUR62021825 Chenopodium quinoa HOM05D000297 ORTHO05D000193 8.8e-09 64.3 40 77.5
Ca_20992_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 8.8e-09 64.3 54 61.1
FAN16G1821 Fragaria x ananassa HOM05D000297 ORTHO05D000193 1.2e-08 63.9 57 61.4
FAN25G0024 Fragaria x ananassa HOM05D000297 ORTHO05D000193 1.2e-08 63.9 66 54.5
MD05G1361600 Malus domestica HOM05D000297 ORTHO05D000193 1.2e-08 63.9 69 55.1
ECA236G1403 Erigeron canadensis HOM05D000297 ORTHO05D000193 1.5e-08 63.5 81 50.6
PSO675G2173 Papaver somniferum HOM05D000297 ORTHO05D000193 1.5e-08 63.5 77 51.9
PSO732G0479 Papaver somniferum HOM05D000297 ORTHO05D000193 1.5e-08 63.5 77 51.9
ECA236G2756 Erigeron canadensis HOM05D000297 ORTHO05D000193 2.6e-08 62.8 83 47.0
MBI14_g10141_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 2.6e-08 62.8 35 82.9
SGA_v2.0_scaffold186G40125 Striga asiatica HOM05D000297 ORTHO05D000193 2.6e-08 62.8 77 49.4
HPP92_017968 Vanilla planifolia HOM05D000297 ORTHO05D000193 2.6e-08 62.8 40 75.0
Eucgr.E03857 Eucalyptus grandis HOM05D000297 ORTHO05D000193 3.3e-08 62.4 44 75.0
MSTRG.16052 Avicennia marina HOM05D000297 ORTHO05D000193 4.4e-08 62.0 76 48.7
RcHm_v2.0_Chr5g0000501 Rosa chinensis HOM05D000297 ORTHO05D000193 4.4e-08 62.0 46 67.4
TWI63G1331 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 4.4e-08 62.0 54 61.1
Nn1g07518 Nelumbo nucifera HOM05D000297 ORTHO05D000193 5.7e-08 61.6 61 55.7
Rhsim13G0140800 Rhododendron simsii HOM05D000297 ORTHO05D000193 5.7e-08 61.6 33 87.9
MD10G1339000 Malus domestica HOM05D000297 ORTHO05D000193 7.5e-08 61.2 43 74.4
Nitab4.5_0000147g0320 Nicotiana tabacum HOM05D000297 ORTHO05D000193 7.5e-08 61.2 33 84.8
Peaxi162Scf00827g00055 Petunia axillaris HOM05D000297 ORTHO05D000193 7.5e-08 61.2 33 87.9
SalBow8G2500 Salvia bowleyana HOM05D000297 ORTHO05D000193 7.5e-08 61.2 36 83.3
EL10Ac8g20264 Beta vulgaris HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
AUR62012833 Chenopodium quinoa HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
AUR62012847 Chenopodium quinoa HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
AUR62021813 Chenopodium quinoa HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
ECA232G4557 Erigeron canadensis HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
Hma1.2p1_1175F.1_g264020 Hydrangea macrophylla HOM05D000297 ORTHO05D000193 9.7e-08 60.8 33 87.9
Sabra06G0004200 Salix brachista HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
Sc17g0007980 Simmondsia chinensis HOM05D000297 ORTHO05D000193 9.7e-08 60.8 31 93.5
Sopen05g001440 Solanum pennellii HOM05D000297 ORTHO05D012389 9.7e-08 60.8 77 46.8
Sopen10g005220 Solanum pennellii HOM05D000297 ORTHO05D012389 2.2e-07 59.7 37 73.0
Migut.M01443 Erythranthe guttata HOM05D000297 ORTHO05D000193 2.8e-07 59.3 33 84.8
MBI15_g03890_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 2.8e-07 59.3 30 90.0
Prupe.4G003800 Prunus persica HOM05D000297 ORTHO05D000193 3.7e-07 58.9 31 90.3
Cfa020189 Carpinus fangiana HOM05D000297 ORTHO05D000193 4.8e-07 58.5 87 44.8
SEGI_24194 Sequoiadendron giganteum HOM05D000297 ORTHO05D000193 4.8e-07 58.5 79 43.0
Sopen05g001460 Solanum pennellii HOM05D000297 ORTHO05D012389 4.8e-07 58.5 77 46.8
unitig_26.g10041 Utricularia gibba HOM05D000297 ORTHO05D000193 4.8e-07 58.5 31 90.3
ATR0751G004 Amborella trichopoda HOM05D000297 ORTHO05D000193 6.3e-07 58.2 32 81.2
MELO3C014120.2 Cucumis melo HOM05D000297 ORTHO05D000193 6.3e-07 58.2 40 72.5
CsaV3_3G004250 Cucumis sativus L. HOM05D000297 ORTHO05D000193 6.3e-07 58.2 40 72.5
ClCG10G004460 Citrullus lanatus HOM05D000297 ORTHO05D000193 8.2e-07 57.8 42 69.0
Gorai.013G152500 Gossypium raimondii HOM05D000297 ORTHO05D000193 8.2e-07 57.8 81 44.4
Solyc05g005380.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 1.1e-06 57.4 77 45.5
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 1.4e-06 57.0 30 86.7
MD02G1191900 Malus domestica HOM05D000297 ORTHO05D000193 1.4e-06 57.0 44 65.9
Sabra16G0010600 Salix brachista HOM05D000297 ORTHO05D000193 1.4e-06 57.0 31 87.1
Solyc10g009440.4 Solanum lycopersicum HOM05D000297 ORTHO05D000193 1.4e-06 57.0 37 67.6
Sopen05g001430 Solanum pennellii HOM05D000297 ORTHO05D012389 1.4e-06 57.0 77 45.5
Thecc.07G013400 Theobroma cacao HOM05D000297 ORTHO05D000193 1.4e-06 57.0 81 43.2
MD02G1192100 Malus domestica HOM05D000297 ORTHO05D000193 1.8e-06 56.6 46 65.2
Solyc05g005390.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 1.8e-06 56.6 77 44.2
PGSC0003DMG400013502 Solanum tuberosum HOM05D000297 ORTHO05D000193 2.4e-06 56.2 31 83.9
HanXRQChr04g0117361 Helianthus annuus HOM05D000297 ORTHO05D000193 3.1e-06 55.8 34 79.4
Solyc05g005440.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 3.1e-06 55.8 77 44.2
Aqoxy1G04258 Aquilegia oxysepala HOM05D000297 ORTHO05D000193 4.1e-06 55.5 78 44.9
CsaV3_3G004260 Cucumis sativus L. HOM05D000297 ORTHO05D000193 4.1e-06 55.5 40 67.5
CsaV3_3G004270 Cucumis sativus L. HOM05D000297 ORTHO05D000193 4.1e-06 55.5 40 67.5
Sed0020464 Sechium edule HOM05D000297 ORTHO05D000193 4.1e-06 55.5 32 78.1
Carub.0001s2149 Capsella rubella HOM05D000297 ORTHO05D000193 5.3e-06 55.1 82 43.9
Duzib213G0465 Durio zibethinus HOM05D000297 ORTHO05D000193 5.3e-06 55.1 47 61.7
Sp1g19490 Schrenkiella parvula HOM05D000297 ORTHO05D000193 7.0e-06 54.7 40 65.0
Solyc02g032190.1 Solanum lycopersicum HOM05D000297 ORTHO05D000193 7.0e-06 54.7 50 56.0
COL.COLO4_09835 Corchorus olitorius HOM05D000297 ORTHO05D000193 9.1e-06 54.3 30 83.3
Thhalv10009593m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 9.1e-06 54.3 40 65.0
Gohir.A13G132600 Gossypium hirsutum HOM05D000297 ORTHO05D000193 9.1e-06 54.3 30 83.3
Gohir.D13G136000 Gossypium hirsutum HOM05D000297 ORTHO05D000193 9.1e-06 54.3 30 83.3
Manes.03G141500 Manihot esculenta HOM05D000297 ORTHO05D000193 9.1e-06 54.3 30 83.3
SHI23581 Sapria himalayana HOM05D000297 ORTHO05D000193 9.1e-06 54.3 50 56.0
THA.LOC104811667 Tarenaya hassleriana HOM05D000297 ORTHO05D000193 9.1e-06 54.3 30 83.3


User provided reference genes

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