Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-310 1067.4 536 100.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 3.6e-310 1067.4 536 100.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 3.6e-310 1067.4 536 100.0
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 6.4e-307 1056.6 536 98.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-302 1042.0 535 97.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.4e-284 981.1 539 90.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 5.8e-284 980.3 539 90.7
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 9.9e-284 979.5 539 90.7
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-283 979.2 537 90.9
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-283 979.2 537 90.9
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.7e-283 978.8 537 90.7
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.7e-283 978.8 537 91.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 6.4e-283 976.9 537 90.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 8.4e-283 976.5 539 90.4
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.1e-282 976.1 538 90.3
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 5.1e-280 967.2 537 90.1
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.1e-279 966.1 530 91.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-279 965.7 531 91.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.3e-279 964.5 538 89.2
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 7.4e-279 963.4 537 89.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 4.0e-277 957.6 539 88.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-276 955.3 563 85.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 6.5e-267 923.7 521 89.6
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.9e-243 845.1 537 79.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.6e-233 812.8 537 77.1
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.0e-232 808.5 534 76.2
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 8.8e-232 807.0 529 77.3
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.2e-231 806.6 532 76.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.2e-231 806.6 534 76.8
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-231 806.2 530 77.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.7e-230 802.7 536 75.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 8.3e-230 800.4 522 76.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.1e-229 798.1 530 76.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 5.9e-228 794.3 539 74.8
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.2e-227 792.3 530 74.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.2e-227 792.3 527 76.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 6.5e-227 790.8 530 74.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.5e-226 787.7 530 74.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.5e-226 787.7 534 76.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.7e-225 785.4 526 74.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.6e-225 785.0 524 76.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.3e-224 782.3 535 73.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.3e-224 782.3 524 74.2
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.0e-224 781.6 531 74.6
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-223 779.2 531 73.1
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 6.3e-222 774.2 541 72.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 8.3e-222 773.9 528 73.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 9.2e-221 770.4 516 74.4
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.0e-220 769.2 532 73.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.5e-220 768.1 531 73.3
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.0e-219 766.9 544 72.6
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.0e-219 764.6 528 72.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.0e-219 764.6 531 72.9
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 8.6e-219 763.8 533 72.8
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.3e-218 761.5 523 72.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.2e-217 760.0 525 72.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 4.7e-217 758.1 536 72.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.5e-215 753.1 525 73.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.4e-215 751.9 459 82.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.4e-215 751.9 459 81.5
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.1e-213 746.9 535 70.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.4e-213 745.7 537 70.4
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.0e-213 744.2 536 70.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 9.2e-213 743.8 536 70.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.0e-212 742.7 517 73.3
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.7e-212 742.3 524 71.0
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 4.6e-212 741.5 529 71.5
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 7.8e-212 740.7 521 72.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 7.8e-212 740.7 523 71.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.3e-211 740.0 521 71.4
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.9e-211 738.4 535 70.1
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.5e-210 735.7 521 71.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 9.5e-210 733.8 525 72.6
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 9.5e-210 733.8 471 79.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.6e-209 733.0 505 72.9
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.8e-209 732.3 536 68.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.8e-209 732.3 478 76.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 3.6e-209 731.9 526 71.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 4.7e-209 731.5 471 79.0
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.8e-208 729.6 529 69.8
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.3e-208 729.2 536 68.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.8e-207 723.8 531 69.3
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.4e-206 721.1 524 70.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.2e-205 718.8 528 68.4
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.1e-205 718.4 529 68.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 7.0e-205 717.6 517 71.6
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.2e-204 716.8 531 69.5
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.5e-202 709.1 523 68.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.8e-201 705.7 536 66.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.1e-200 703.7 536 67.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.4e-200 703.4 432 81.5
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 8.9e-200 700.7 542 66.1
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.3e-198 696.8 529 67.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.2e-196 690.3 537 64.8
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 6.0e-196 688.0 534 65.0
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-195 687.2 523 66.9
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-195 687.2 523 66.9
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.0e-195 685.6 541 65.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.0e-195 685.6 535 64.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 3.3e-194 682.2 541 65.1
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 9.5e-194 680.6 528 65.0
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.6e-193 679.9 457 73.3
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.1e-193 679.5 537 65.2
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 4.4e-191 671.8 533 66.2
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.8e-191 671.4 447 76.7
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.8e-191 671.4 532 62.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-189 667.2 529 63.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.1e-189 667.2 523 63.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.7e-187 659.8 460 70.4
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 5.8e-183 644.8 528 61.4
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 8.4e-182 641.0 528 59.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.6e-180 636.7 541 59.0
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 5.6e-178 628.2 442 72.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.8e-176 623.2 532 60.2
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.2e-172 610.5 388 76.8
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 7.6e-167 591.3 384 76.8
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.4e-160 569.7 531 56.1
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.1e-160 569.3 460 62.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.9e-158 562.8 382 73.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.1e-152 542.7 524 55.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-151 539.7 392 69.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 4.6e-148 528.9 381 69.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.1e-144 516.2 316 78.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.9e-141 506.9 358 70.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.9e-139 499.2 353 70.3
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.5e-134 481.9 336 69.6
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.1e-130 471.1 471 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 4.5e-127 459.1 485 48.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 9.4e-125 451.4 455 48.8
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 9.4e-117 424.9 559 42.8
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.5e-111 406.4 541 40.5
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 5.0e-102 375.9 224 83.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 9.2e-96 355.1 194 90.7
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 9.8e-90 335.1 264 67.4
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-74 285.0 151 95.4
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.6e-63 248.1 179 71.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.3e-61 239.2 188 66.0
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 9.6e-53 212.2 171 63.2
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.1e-43 180.6 137 66.4
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.5e-42 178.3 152 61.2
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 3.4e-42 177.2 160 56.2
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-40 172.2 143 60.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 9.0e-35 152.5 136 58.1
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.3e-32 142.5 97 67.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.1e-31 141.4 149 54.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.3e-25 122.1 110 60.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.1e-23 114.8 472 25.8
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.0e-22 110.9 469 24.5
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 8.8e-22 109.4 76 71.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-20 105.5 71 71.8
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.2e-12 78.2 73 53.4
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.2e-12 78.2 73 53.4
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.1e-08 65.9 45 66.7
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 4.2e-08 63.9 34 82.4
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.1e-07 61.6 46 56.5
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.6e-07 60.8 50 52.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.8e-06 58.5 46 54.3
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 5.2e-06 57.0 132 31.1


User provided reference genes

Program Settings