Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.4e-50 201.4 109 100.0
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.4e-50 201.4 109 100.0
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.8e-49 198.0 109 98.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 9.4e-48 193.4 109 95.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.1e-47 190.7 109 93.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 2.3e-46 188.7 110 93.6
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 2.3e-46 188.7 110 93.6
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.0e-45 185.7 109 94.5
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.0e-45 185.7 109 94.5
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.3e-44 183.0 100 100.0
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.1e-43 178.3 109 90.8
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.5e-41 170.6 98 93.9
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 6.5e-41 170.6 100 92.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.6e-39 166.0 99 92.9
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.5e-37 159.5 100 90.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.2e-36 155.6 111 79.3
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.5e-34 148.3 98 87.8
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 7.7e-34 147.1 95 87.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.2e-31 139.8 96 84.4
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.6e-31 139.4 109 73.4
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 4.1e-27 124.8 111 65.8
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.7e-26 122.1 98 73.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.7e-25 119.4 110 65.5
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.7e-25 119.4 111 63.1
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-24 116.7 108 61.1
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.2e-23 113.2 111 61.3
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.2e-23 113.2 108 63.9
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.1e-23 112.5 111 62.2
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.8e-23 112.1 111 60.4
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 8.0e-23 110.5 112 64.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 6.8e-22 107.5 112 64.3
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.2e-21 106.7 113 60.2
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.2e-21 106.7 111 57.7
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.7e-21 104.4 100 60.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.7e-21 104.4 109 59.6
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 7.5e-21 104.0 111 56.8
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.7e-20 102.8 100 61.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-20 102.8 115 59.1
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.8e-20 102.1 111 59.5
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.7e-20 101.7 111 59.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 4.9e-20 101.3 110 58.2
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 6.3e-20 100.9 98 64.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.1e-19 100.1 109 58.7
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-19 100.1 100 62.0
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.8e-19 99.4 110 60.0
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.4e-19 99.0 112 62.5
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.4e-19 99.0 112 62.5
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.4e-19 99.0 99 60.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.1e-19 98.6 111 60.4
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 4.1e-19 98.2 102 63.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.1e-19 98.2 109 60.6
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 9.2e-19 97.1 111 55.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.2e-19 97.1 109 59.6
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.2e-18 96.7 112 56.2
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.2e-18 96.7 109 59.6
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.6e-18 96.3 104 59.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.7e-18 95.5 111 55.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.5e-18 95.1 99 59.6
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.5e-18 95.1 102 60.8
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.7e-17 92.8 99 62.6
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.3e-17 92.4 108 55.6
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.9e-17 92.0 109 55.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 2.9e-17 92.0 111 53.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 6.6e-17 90.9 112 54.5
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 1.9e-16 89.4 100 56.0
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.5e-16 89.0 111 53.2
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.5e-16 89.0 103 58.3
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 5.6e-16 87.8 113 52.2
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 2.1e-15 85.9 98 58.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 3.6e-15 85.1 104 54.8
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 4.7e-15 84.7 93 57.0
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.7e-15 84.7 98 55.1
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 8.0e-15 84.0 102 53.9
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 8.0e-15 84.0 100 54.0
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 8.0e-15 84.0 103 58.3
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.4e-14 83.2 98 54.1
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.8e-14 82.8 100 59.0
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.0e-14 82.0 103 55.3
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 4.0e-14 81.6 100 57.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.8e-14 80.9 110 53.6
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.2e-13 80.1 98 53.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.2e-13 80.1 109 52.3
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.2e-13 80.1 98 54.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.5e-13 79.7 109 53.2
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 4.4e-13 78.2 98 52.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.8e-13 77.8 109 51.4
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 5.8e-13 77.8 100 58.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 9.8e-13 77.0 100 52.0
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.3e-12 76.6 100 53.0
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.2e-12 75.9 100 50.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 4.9e-12 74.7 89 52.8
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 8.3e-12 73.9 101 52.5
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 1.1e-11 73.6 92 48.9
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.1e-11 73.6 98 51.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.1e-11 73.6 102 52.9
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.1e-11 73.6 113 51.3
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.9e-11 72.8 81 61.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 2.4e-11 72.4 98 54.1
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.4e-11 72.4 109 48.6
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 5.4e-11 71.2 107 49.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.6e-10 69.7 110 48.2
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.6e-10 68.2 54 66.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 7.8e-10 67.4 103 44.7
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.8e-10 67.4 94 53.2
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.8e-10 67.4 94 53.2
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.7e-09 66.2 91 47.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.3e-09 65.9 98 48.0
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.0e-09 65.5 102 43.1
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.9e-09 65.1 66 56.1
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 5.0e-09 64.7 51 62.7
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 5.0e-09 64.7 91 45.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.0e-09 64.7 91 45.1
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 6.6e-09 64.3 45 71.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 6.6e-09 64.3 45 71.1
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 8.6e-09 63.9 109 41.3
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 8.6e-09 63.9 109 41.3
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 8.6e-09 63.9 109 41.3
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 8.6e-09 63.9 109 43.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 8.6e-09 63.9 86 47.7
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 8.6e-09 63.9 70 54.3
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 8.6e-09 63.9 67 56.7
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.1e-08 63.5 109 44.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.5e-08 63.2 66 54.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.5e-08 63.2 54 61.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.9e-08 62.8 109 43.1
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.9e-08 62.8 109 44.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 2.5e-08 62.4 109 41.3
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.3e-08 62.0 49 63.3
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.3e-08 62.0 47 66.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 4.3e-08 61.6 86 48.8
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 4.3e-08 61.6 70 52.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.3e-08 61.6 101 41.6
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 5.6e-08 61.2 99 43.4
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 7.3e-08 60.8 54 70.4
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 9.5e-08 60.5 86 48.8
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.5e-08 60.5 93 45.2
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 9.5e-08 60.5 104 42.3
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 9.5e-08 60.5 109 41.3
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.2e-07 60.1 89 44.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.2e-07 60.1 86 50.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.6e-07 59.7 109 41.3
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.6e-07 59.7 95 43.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.6e-07 59.7 101 45.5
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.6e-07 59.7 93 49.5
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.1e-07 59.3 95 43.2
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.1e-07 59.3 48 60.4
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.1e-07 59.3 40 72.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.1e-07 59.3 101 46.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.1e-07 59.3 106 40.6
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.8e-07 58.9 104 40.4
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.8e-07 58.9 83 47.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.8e-07 58.9 109 39.4
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 3.6e-07 58.5 48 60.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.6e-07 58.5 99 44.4
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.6e-07 58.5 109 39.4
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.7e-07 58.2 103 42.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.7e-07 58.2 92 44.6
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 4.7e-07 58.2 101 40.6
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 8.0e-07 57.4 109 39.4
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 8.0e-07 57.4 102 45.1
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 8.0e-07 57.4 94 45.7
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 8.0e-07 57.4 103 44.7
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.1e-06 57.0 84 45.2
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-06 56.6 103 43.7
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.4e-06 56.6 72 47.2
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 1.4e-06 56.6 38 78.9
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.8e-06 56.2 109 43.1
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.8e-06 56.2 97 43.3
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.3e-06 55.8 103 39.8
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.3e-06 55.8 109 39.4
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-06 55.8 109 39.4
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.3e-06 55.8 109 39.4
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.3e-06 55.8 86 45.3
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.1e-06 55.5 109 39.4
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.1e-06 55.5 109 39.4
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.1e-06 55.5 51 56.9
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 3.1e-06 55.5 100 47.0
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 4.0e-06 55.1 103 39.8
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 4.0e-06 55.1 81 44.4
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.0e-06 55.1 88 47.7
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 5.2e-06 54.7 87 44.8
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.2e-06 54.7 76 50.0
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 8.9e-06 53.9 92 42.4
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 8.9e-06 53.9 98 43.9
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 8.9e-06 53.9 97 42.3


User provided reference genes

Program Settings