Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 9.5e-179 630.2 343 100.0
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 9.5e-179 630.2 343 100.0
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 9.9e-152 540.4 301 99.0
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 9.5e-147 523.9 328 89.9
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 9.5e-147 523.9 328 89.9
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 3.4e-144 515.4 296 95.9
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 3.8e-143 511.9 296 95.3
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.1e-139 500.4 301 92.0
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 2.1e-130 469.5 317 84.5
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 4.8e-130 468.4 312 83.7
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 7.6e-128 461.1 310 83.9
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 8.4e-127 457.6 316 82.6
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.8e-124 449.9 298 83.2
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 3.4e-120 435.6 296 85.8
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 9.9e-120 434.1 309 80.3
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 3.5e-109 399.1 363 67.5
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 3.3e-99 365.9 306 67.0
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 9.1e-97 357.8 312 65.1
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 7.7e-96 354.8 301 65.8
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 7.7e-96 354.8 323 62.5
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.3e-95 354.0 306 68.3
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.4e-94 350.5 312 65.4
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 4.2e-94 349.0 309 64.7
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 1.6e-93 347.1 319 58.3
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 2.1e-93 346.7 301 65.1
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 7.9e-93 344.7 317 62.8
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.0e-92 344.4 320 60.3
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 3.9e-92 342.4 305 64.6
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.6e-91 339.7 328 60.4
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.6e-91 339.7 315 64.4
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 2.6e-91 339.7 315 64.4
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.3e-91 339.3 322 55.9
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 3.3e-91 339.3 327 58.7
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 7.4e-91 338.2 337 55.8
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.3e-90 337.4 334 59.9
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 3.7e-90 335.9 333 59.5
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 4.8e-90 335.5 331 60.1
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 4.8e-90 335.5 314 56.7
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 6.3e-90 335.1 332 59.9
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 6.3e-90 335.1 324 60.5
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 8.2e-90 334.7 312 58.7
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 8.2e-90 334.7 325 60.0
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 9.1e-89 331.3 315 63.2
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.5e-88 330.5 325 53.5
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.5e-88 330.5 329 59.3
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 2.6e-88 329.7 316 60.4
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 4.5e-88 328.9 307 62.5
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 4.5e-88 328.9 317 58.7
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 5.9e-88 328.6 318 61.0
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 7.7e-88 328.2 317 60.9
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 2.2e-87 326.6 301 56.5
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 1.9e-86 323.6 318 60.7
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 1.9e-86 323.6 304 61.5
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 2.5e-86 323.2 344 57.0
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.2e-86 322.4 309 57.9
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 4.2e-86 322.4 308 63.3
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 4.2e-86 322.4 319 58.3
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 7.2e-86 321.6 298 59.4
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 9.4e-86 321.2 325 58.5
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.6e-85 320.5 319 55.5
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 1.0e-84 317.8 325 58.8
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.4e-84 317.4 325 60.0
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 1.4e-84 317.4 320 54.7
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.8e-84 317.0 324 59.0
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 2.3e-84 316.6 317 60.6
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 3.0e-84 316.2 310 59.7
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 3.0e-84 316.2 302 62.3
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 5.2e-84 315.5 322 58.4
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 6.7e-84 315.1 337 56.4
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.0e-83 313.5 305 56.1
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 2.0e-83 313.5 332 55.7
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 3.3e-83 312.8 300 61.0
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.7e-82 310.5 321 55.5
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 2.2e-82 310.1 296 60.1
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 6.3e-82 308.5 322 58.1
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 1.4e-81 307.4 309 62.5
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.6e-80 303.1 304 56.2
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 3.5e-80 302.8 329 51.1
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 2.9e-79 299.7 331 53.8
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 7.2e-78 295.0 166 90.4
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.2e-78 295.0 290 58.6
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.2e-78 295.0 290 58.6
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.1e-77 293.5 347 49.3
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 3.6e-77 292.7 262 63.7
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 5.2e-76 288.9 292 55.8
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 5.2e-76 288.9 402 43.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.8e-73 280.4 273 57.9
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 3.5e-72 276.2 199 69.8
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 5.9e-72 275.4 324 52.2
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 1.9e-70 270.4 317 54.9
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 2.7e-69 266.5 145 92.4
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 6.1e-69 265.4 201 66.7
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 8.0e-69 265.0 296 50.3
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 1.4e-68 264.2 325 45.2
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 2.3e-68 263.5 205 64.4
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 3.0e-68 263.1 297 53.5
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 5.2e-68 262.3 266 59.0
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 5.7e-67 258.8 188 68.1
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 7.5e-67 258.5 183 69.4
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.7e-66 257.3 250 58.8
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 4.8e-66 255.8 259 52.1
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 2.8e-61 240.0 344 41.9
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 9.2e-57 224.9 239 61.1
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.3e-55 221.1 322 41.9
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 4.3e-54 216.1 240 46.2
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 2.3e-52 210.3 213 58.2
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 8.3e-50 201.8 189 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 7.8e-48 195.3 314 41.4
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 2.3e-47 193.7 305 38.7
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 4.9e-42 176.0 151 77.5
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 1.0e-39 168.3 143 58.0
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 2.3e-39 167.2 413 29.1
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 7.1e-25 119.0 118 53.4
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 2.7e-24 117.1 343 28.3
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 6.2e-21 105.9 77 67.5
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 6.2e-21 105.9 174 40.2
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 3.4e-19 100.1 86 67.4
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 1.4e-17 94.7 70 65.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 7.1e-17 92.4 137 42.3
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 3.5e-16 90.1 133 40.6
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.6e-16 89.7 53 81.1
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 5.1e-15 86.3 55 65.5
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 5.6e-14 82.8 45 84.4
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 2.1e-13 80.9 54 74.1
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 4.8e-13 79.7 138 36.2
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 2.7e-08 63.9 44 75.0
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 4.6e-08 63.2 85 38.8
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.1e-06 58.5 67 46.3
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 4.3e-06 56.6 72 43.1


User provided reference genes

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