Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16915 Brassica carinata HOM05D008727 ORTHO05D023847 9.5e-104 380.2 192 100.0
C02p48180 Brassica napus HOM05D008727 ORTHO05D023847 9.5e-104 380.2 192 100.0
BolC2t10850H Brassica oleracea HOM05D008727 ORTHO05D023847 3.1e-102 375.2 192 99.0
BraA02t08079Z Brassica rapa HOM05D008727 ORTHO05D023847 9.9e-101 370.2 192 97.4
A02p30610 Brassica napus HOM05D008727 ORTHO05D023847 2.9e-100 368.6 192 96.9
BolC9t60173H Brassica oleracea HOM05D008727 ORTHO05D011379 1.3e-36 157.1 179 50.3
C09p74390 Brassica napus HOM05D008727 ORTHO05D011379 2.2e-36 156.4 179 49.7
BcaC06g31427 Brassica carinata HOM05D008727 ORTHO05D011379 4.7e-34 148.7 176 47.7
A06p45420 Brassica napus HOM05D008727 ORTHO05D011379 4.7e-34 148.7 181 48.1
BraA06t27410Z Brassica rapa HOM05D008727 ORTHO05D011379 4.7e-34 148.7 181 48.1
A06p45410 Brassica napus HOM05D008727 ORTHO05D011379 2.3e-33 146.4 176 50.6
BraA06t27409Z Brassica rapa HOM05D008727 ORTHO05D011379 2.3e-33 146.4 176 50.6
C07p30610 Brassica napus HOM05D008727 ORTHO05D011379 5.2e-33 145.2 179 49.7
BolC7t43601H Brassica oleracea HOM05D008727 ORTHO05D011379 5.2e-33 145.2 179 49.7
BcaC06g34300 Brassica carinata HOM05D008727 ORTHO05D011379 6.7e-33 144.8 179 49.7
Sp2g11770 Schrenkiella parvula HOM05D008727 ORTHO05D011379 2.6e-32 142.9 176 49.4
C07p30620 Brassica napus HOM05D008727 ORTHO05D011379 5.7e-32 141.7 177 48.6
BraA10t45379Z Brassica rapa HOM05D008727 ORTHO05D011379 7.5e-32 141.4 181 45.9
BcaC06g34299 Brassica carinata HOM05D008727 ORTHO05D011379 9.7e-32 141.0 177 48.6
BcaC06g31426 Brassica carinata HOM05D008727 ORTHO05D011379 3.7e-31 139.0 177 48.6
BolC7t43602H Brassica oleracea HOM05D008727 ORTHO05D011379 3.7e-31 139.0 177 48.0
AT1G54620 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 4.8e-31 138.7 175 47.4
A10p33490 Brassica napus HOM05D008727 ORTHO05D011379 1.1e-30 137.5 181 45.9
Thhalv10001116m.g Eutrema salsugineum HOM05D008727 ORTHO05D011379 2.4e-30 136.3 181 46.4
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 4.1e-30 135.6 175 47.4
BcaB07g30480 Brassica carinata HOM05D008727 ORTHO05D011379 4.1e-30 135.6 165 50.9
BcaC06g31428 Brassica carinata HOM05D008727 ORTHO05D011379 5.3e-30 135.2 161 50.3
A06p45400 Brassica napus HOM05D008727 ORTHO05D011379 9.1e-30 134.4 177 47.5
BraA06t27408Z Brassica rapa HOM05D008727 ORTHO05D011379 9.1e-30 134.4 177 47.5
Carub.0002s0896 Capsella rubella HOM05D008727 ORTHO05D011379 9.1e-30 134.4 175 44.6
AT5G46980 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 4.2e-27 125.6 175 44.6
AT5G46990 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 4.0e-25 119.0 166 42.8
Carub.0008s0088 Capsella rubella HOM05D008727 ORTHO05D011379 4.4e-24 115.5 163 42.3
Thhalv10001202m.g Eutrema salsugineum HOM05D008727 ORTHO05D001261 7.5e-24 114.8 174 40.2
Carub.0008s0084 Capsella rubella HOM05D008727 ORTHO05D011379 4.8e-23 112.1 171 40.9
Carub.0008s0086 Capsella rubella HOM05D008727 ORTHO05D011379 6.3e-23 111.7 170 40.6
Sp2g11780 Schrenkiella parvula HOM05D008727 ORTHO05D001261 8.3e-23 111.3 187 39.6
BcaNung04448 Brassica carinata HOM05D008727 ORTHO05D011379 1.1e-22 110.9 123 50.4
CARHR055710 Cardamine hirsuta HOM05D008727 ORTHO05D011379 1.8e-22 110.2 173 41.0
Sp2g11790 Schrenkiella parvula HOM05D008727 ORTHO05D001261 4.2e-19 99.0 175 38.9
AL8G11310 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 5.2e-17 92.0 182 35.2
Carub.0008s0092 Capsella rubella HOM05D001445 ORTHO05D001261 4.4e-16 89.0 184 32.6
AT5G46930 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 4.9e-15 85.5 182 32.4
CARHR174480 Cardamine hirsuta HOM05D001445 ORTHO05D001261 1.4e-14 84.0 157 35.7
AL8G11340 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.4e-14 83.2 184 32.1
AT5G46970 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 9.2e-14 81.3 166 34.3
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 5.9e-13 78.6 176 31.8
Sp2g11760 Schrenkiella parvula HOM05D001445 ORTHO05D001261 7.8e-13 78.2 182 31.9
Aa31sc241G60 Aethionema arabicum HOM05D001445 ORTHO05D001261 3.8e-12 75.9 182 33.5
Thhalv10001100m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.8e-12 75.9 182 31.9
AL8G11320 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.5e-11 73.9 181 30.9
BcaB07g30808 Brassica carinata HOM05D001445 ORTHO05D001261 1.5e-11 73.9 177 31.1
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 3.3e-11 72.8 177 32.2
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 3.3e-11 72.8 177 32.2
Aa31sc241G40 Aethionema arabicum HOM05D001445 ORTHO05D001261 5.6e-11 72.0 182 31.9
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 7.3e-11 71.6 177 31.6
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 1.6e-10 70.5 181 32.0
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.6e-10 70.5 182 30.2
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 2.8e-10 69.7 180 30.6
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 6.1e-10 68.6 177 30.5
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 8.0e-10 68.2 177 29.4
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 8.0e-10 68.2 177 28.8
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 8.0e-10 68.2 177 28.8
BcaC06g34301 Brassica carinata HOM05D008727 ORTHO05D011379 1.0e-09 67.8 118 40.7
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.4e-09 67.4 181 29.8
A02p30180 Brassica napus HOM05D001445 ORTHO05D001261 1.4e-09 67.4 177 29.9
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 2.3e-09 66.6 177 29.9
C02p48090 Brassica napus HOM05D001445 ORTHO05D001261 3.1e-09 66.2 167 28.7
BolC2t10840H Brassica oleracea HOM05D001445 ORTHO05D001261 3.1e-09 66.2 167 28.7
AT5G46950 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 5.2e-09 65.5 174 31.6
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 5.2e-09 65.5 178 30.3
Sp2g11740 Schrenkiella parvula HOM05D001445 ORTHO05D001261 6.8e-09 65.1 183 27.9
AL8G11300 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 8.9e-09 64.7 54 59.3
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 1.2e-08 64.3 178 30.3
A02p30500 Brassica napus HOM05D001445 ORTHO05D001261 2.0e-08 63.5 167 27.5
BraA02t08068Z Brassica rapa HOM05D001445 ORTHO05D001261 2.0e-08 63.5 167 27.5
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 4.4e-08 62.4 180 28.9
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 4.4e-08 62.4 180 28.9
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 4.4e-08 62.4 180 28.9
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 7.5e-08 61.6 180 27.2
CARHR174500 Cardamine hirsuta HOM05D001445 ORTHO05D001261 7.5e-08 61.6 174 27.6
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 9.8e-08 61.2 180 27.2
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 1.3e-07 60.8 180 27.8
BraA02t08073Z Brassica rapa HOM05D001445 ORTHO05D001261 1.3e-07 60.8 181 29.3
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.7e-07 60.5 180 28.3
A06p45680 Brassica napus HOM05D001445 ORTHO05D001261 2.2e-07 60.1 171 25.7
BraA06t27437Z Brassica rapa HOM05D001445 ORTHO05D001261 2.2e-07 60.1 171 25.7
TWI15G1112 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 3.7e-07 59.3 187 29.4
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 1.1e-06 57.8 170 27.1
BcaC03g16906 Brassica carinata HOM05D001445 ORTHO05D001261 1.4e-06 57.4 161 29.2
BolC7t43597H Brassica oleracea HOM05D008727 ORTHO05D040202 2.4e-06 56.6 57 49.1
AT5G46960 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 4.1e-06 55.8 180 27.2
Thhalv10001199m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 4.1e-06 55.8 164 26.8
Thecc.03G235500 Theobroma cacao HOM05D001445 ORTHO05D001261 5.4e-06 55.5 180 26.7


User provided reference genes

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