Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 2.6e-109 398.7 190 100.0
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 2.6e-109 398.7 190 100.0
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 4.1e-107 391.3 198 96.0
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 5.7e-93 344.4 196 87.2
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 5.0e-81 304.7 200 79.0
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 5.0e-81 304.7 200 79.0
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 5.0e-81 304.7 200 79.0
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 8.1e-79 297.4 189 80.4
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 2.3e-70 269.2 199 71.9
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.7e-68 263.1 188 72.3
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 1.1e-64 250.4 197 69.5
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-64 249.6 187 67.4
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 8.1e-63 244.2 198 60.1
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-62 243.0 199 62.8
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 2.4e-62 242.7 197 64.0
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 5.2e-62 241.5 195 63.6
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 5.2e-62 241.5 195 63.6
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 6.8e-62 241.1 197 62.9
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-61 240.0 197 62.4
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-61 239.2 207 59.9
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 5.8e-61 238.0 189 66.1
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 7.6e-61 237.7 208 59.1
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 9.9e-61 237.3 198 62.1
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 1.7e-60 236.5 194 64.9
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-59 233.8 190 64.2
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 7.1e-59 231.1 198 57.1
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-54 216.9 199 54.8
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 1.8e-54 216.5 189 61.4
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 3.8e-52 208.8 188 59.6
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 3.8e-52 208.8 180 61.1
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 6.4e-52 208.0 188 56.9
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 6.4e-52 208.0 188 56.9
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 8.4e-52 207.6 194 60.3
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 8.4e-52 207.6 188 56.9
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-51 206.5 188 56.4
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.9e-51 206.5 194 59.3
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 5.4e-51 204.9 188 56.4
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 2.7e-50 202.6 189 54.0
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 6.0e-50 201.4 187 54.0
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.9e-50 201.1 187 54.5
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.7e-49 199.9 187 54.0
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.3e-49 199.5 187 53.5
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-48 196.1 188 52.7
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.5e-48 196.1 188 52.7
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 4.3e-48 195.3 187 53.5
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 7.3e-48 194.5 211 49.3
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-47 193.4 189 52.9
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 3.1e-46 189.1 189 55.0
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.3e-46 188.3 186 51.1
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 6.9e-46 188.0 188 50.0
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 9.0e-46 187.6 201 48.3
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.0e-45 186.4 186 52.7
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-42 177.2 213 46.0
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 2.1e-42 176.4 188 50.0
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.9e-42 174.5 189 50.3
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 2.3e-41 172.9 202 50.5
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 4.8e-39 165.2 149 63.8
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 1.4e-38 163.7 189 45.5
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 1.4e-38 163.7 148 62.8
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 1.3e-31 140.6 88 76.1
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 5.0e-28 128.6 88 77.3
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 6.1e-26 121.7 116 57.8
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 6.3e-23 111.7 139 48.9
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.5e-20 101.3 190 32.6
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 7.2e-19 98.2 207 30.9
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 9.4e-19 97.8 208 30.8
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-18 96.3 207 31.4
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 2.7e-18 96.3 207 31.4
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.6e-18 95.9 209 32.1
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.6e-18 95.5 207 30.0
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 6.1e-18 95.1 196 34.2
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 6.1e-18 95.1 196 34.2
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 7.9e-18 94.7 207 32.4
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.0e-17 94.4 206 30.1
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 3.0e-17 92.8 42 97.6
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 5.1e-17 92.0 193 29.5
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 6.7e-17 91.7 180 31.7
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 1.5e-16 90.5 208 32.2
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 2.5e-16 89.7 88 52.3
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 4.3e-16 89.0 218 28.9
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 4.3e-16 89.0 199 30.2
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 5.7e-16 88.6 201 31.8
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 7.4e-16 88.2 199 30.7
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 1.7e-15 87.0 183 32.8
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 2.8e-15 86.3 196 30.1
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 4.8e-15 85.5 208 32.2
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.3e-15 85.1 205 29.8
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 8.2e-15 84.7 42 85.7
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 8.2e-15 84.7 42 85.7
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-14 82.8 207 30.9
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 9.1e-14 81.3 198 28.8
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 9.1e-14 81.3 185 26.5
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 9.1e-14 81.3 185 26.5
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 9.1e-14 81.3 176 30.7
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-13 80.9 207 27.5
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.0e-13 80.1 193 27.5
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.4e-13 79.3 185 30.8
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 7.7e-13 78.2 204 30.9
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-12 77.8 188 27.7
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-12 77.4 207 28.5
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 1.3e-12 77.4 207 28.5
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-12 76.6 236 28.8
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-12 76.6 182 29.1
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-12 76.3 192 29.2
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 5.0e-12 75.5 204 30.4
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-11 74.3 182 27.5
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-11 74.3 182 27.5
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-11 73.6 87 35.6
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.9e-11 73.6 87 35.6
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 1.9e-11 73.6 216 26.4
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 2.5e-11 73.2 182 28.0
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.5e-11 73.2 229 26.6
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 3.2e-11 72.8 204 26.5
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 7.2e-11 71.6 162 36.4
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 9.4e-11 71.2 181 26.0
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-10 70.9 172 34.9
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-10 69.7 180 28.3
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-10 69.7 189 25.4
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 2.7e-10 69.7 190 28.9
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-10 69.3 189 24.9
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 7.9e-10 68.2 219 24.2
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.3e-09 66.6 224 24.1
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-09 66.2 197 27.4
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-09 66.2 186 25.8
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 3.0e-09 66.2 186 25.8
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 3.9e-09 65.9 188 25.5
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 6.7e-09 65.1 192 28.6
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 8.8e-09 64.7 88 42.0
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 8.8e-09 64.7 88 42.0
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.5e-08 63.9 90 36.7
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-08 63.9 200 30.5
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.3e-08 62.8 230 22.6
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.3e-08 62.8 223 22.9
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 3.3e-08 62.8 88 34.1
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 3.3e-08 62.8 215 27.0
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 3.3e-08 62.8 218 26.6
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 3.3e-08 62.8 221 24.9
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 7.4e-08 61.6 195 27.7
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 7.4e-08 61.6 195 27.7
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-07 60.1 132 27.3
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.2e-07 60.1 88 35.2
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 3.7e-07 59.3 160 27.5
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 3.7e-07 59.3 160 27.5
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 1.4e-06 57.4 86 32.6
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.4e-06 57.4 118 27.1
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-06 56.6 138 29.0
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 4.1e-06 55.8 78 34.6
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 5.3e-06 55.5 78 33.3
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 5.3e-06 55.5 86 31.4
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 5.3e-06 55.5 86 31.4
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 7.0e-06 55.1 78 33.3
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.1e-06 54.7 88 30.7
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 9.1e-06 54.7 88 31.8


User provided reference genes

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