Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 4.9e-76 287.7 145 100.0
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-63 246.5 145 89.0
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 4.6e-58 228.0 134 88.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.4e-38 163.3 208 51.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 6.9e-38 161.0 213 49.8
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 2.0e-37 159.5 209 49.8
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.6e-37 159.1 209 50.2
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 5.8e-37 157.9 213 49.3
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 7.6e-37 157.5 213 49.3
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 9.9e-37 157.1 216 50.0
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.4e-36 154.5 215 49.3
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 8.4e-36 154.1 215 49.3
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 8.4e-36 154.1 208 49.5
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 8.4e-36 154.1 215 49.3
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 8.4e-36 154.1 208 49.5
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 4.6e-34 148.3 204 48.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 6.2e-31 137.9 180 46.7
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 8.1e-31 137.5 173 47.4
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.1e-30 135.6 210 42.9
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 6.9e-30 134.4 204 43.6
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.2e-29 133.7 199 45.2
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.4e-29 132.1 206 44.7
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.4e-29 132.1 206 44.7
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 3.4e-29 132.1 210 42.4
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 4.5e-29 131.7 173 46.8
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.5e-29 131.7 199 44.7
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 5.8e-29 131.3 198 42.9
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 5.8e-29 131.3 197 44.7
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 5.8e-29 131.3 198 41.9
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 7.6e-29 131.0 202 45.0
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 9.9e-29 130.6 182 45.6
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.3e-28 130.2 201 42.8
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.7e-28 129.8 207 42.5
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.7e-28 129.8 176 46.0
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.2e-28 129.4 172 46.5
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 2.9e-28 129.0 199 41.7
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.9e-28 129.0 199 43.2
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 2.9e-28 129.0 203 42.4
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 4.9e-28 128.3 205 44.4
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 4.9e-28 128.3 204 42.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 4.9e-28 128.3 208 42.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 6.4e-28 127.9 214 41.6
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 6.4e-28 127.9 210 41.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 8.4e-28 127.5 199 41.7
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 8.4e-28 127.5 206 40.8
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.1e-27 127.1 198 41.9
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.1e-27 127.1 209 42.6
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.1e-27 127.1 173 44.5
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.1e-27 127.1 197 43.7
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.4e-27 126.7 215 41.4
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.4e-27 126.7 206 42.2
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.9e-27 126.3 206 41.7
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.4e-27 125.9 200 41.5
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 2.4e-27 125.9 203 41.4
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.4e-27 125.9 207 43.0
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 4.2e-27 125.2 192 43.8
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.5e-27 124.8 203 41.4
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 5.5e-27 124.8 198 42.4
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 7.1e-27 124.4 175 44.6
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 9.3e-27 124.0 206 42.2
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 9.3e-27 124.0 183 42.6
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.2e-26 123.6 208 40.9
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.6e-26 123.2 201 42.3
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.6e-26 123.2 201 42.3
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.6e-26 123.2 194 42.8
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.1e-26 122.9 175 44.6
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.1e-26 122.9 197 40.1
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.7e-26 122.5 196 42.3
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.7e-26 122.5 182 42.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.7e-26 122.5 198 42.4
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.7e-26 122.5 197 41.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.5e-26 122.1 204 42.6
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 4.6e-26 121.7 173 45.1
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 6.0e-26 121.3 211 41.2
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 6.0e-26 121.3 182 42.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 7.9e-26 120.9 198 40.4
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 7.9e-26 120.9 173 41.6
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 7.9e-26 120.9 217 41.9
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 7.9e-26 120.9 195 42.1
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.0e-25 120.6 209 40.7
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-25 120.2 197 40.1
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.3e-25 120.2 210 39.5
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.8e-25 119.8 181 42.5
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.8e-25 119.8 216 40.3
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.8e-25 119.8 197 40.6
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.3e-25 119.4 199 42.2
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.3e-25 119.4 199 42.2
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.0e-25 119.0 197 40.1
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.0e-25 119.0 204 40.2
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 3.9e-25 118.6 187 41.2
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 5.1e-25 118.2 206 39.8
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 5.1e-25 118.2 163 50.3
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 5.1e-25 118.2 195 41.5
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 6.7e-25 117.9 186 41.9
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 6.7e-25 117.9 204 39.7
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.7e-25 117.9 204 39.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.7e-25 117.9 204 39.7
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.1e-24 117.1 195 41.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.5e-24 116.7 175 43.4
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.5e-24 116.7 204 39.7
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.5e-24 116.7 200 40.0
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.9e-24 116.3 175 43.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.5e-24 115.9 197 39.1
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.5e-24 115.9 195 40.0
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.5e-24 115.9 197 40.6
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 3.3e-24 115.5 172 41.3
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.3e-24 115.5 206 41.3
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 3.3e-24 115.5 172 42.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.3e-24 115.2 204 38.7
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 4.3e-24 115.2 205 38.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.0e-22 108.6 196 37.2
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.2e-21 107.1 180 40.0
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.4e-19 100.1 92 57.6
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.5e-19 99.4 199 37.2
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 9.7e-16 87.4 85 52.9
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 2.2e-15 86.3 60 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 1.4e-14 83.6 181 30.9
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 3.1e-14 82.4 79 62.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 3.1e-14 82.4 79 62.0
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.5e-13 80.1 202 32.7
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.5e-13 80.1 172 33.7
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.6e-13 79.3 179 30.2
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 4.5e-13 78.6 197 34.0
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.4e-11 73.6 175 36.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.8e-09 66.6 196 29.1
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 1.1e-08 63.9 40 75.0
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-08 63.5 135 36.3
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 7.4e-08 61.2 66 45.5
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 9.1e-06 54.3 32 78.1


User provided reference genes

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