Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p47480 Brassica napus HOM05D002109 ORTHO05D002149 1.5e-46 189.1 92 100.0
BcaC03g16855 Brassica carinata HOM05D002109 ORTHO05D002149 6.8e-23 110.5 57 96.5
A02p29990 Brassica napus HOM05D002109 ORTHO05D002149 6.8e-23 110.5 57 96.5
BolC2t10789H Brassica oleracea HOM05D002109 ORTHO05D002149 6.8e-23 110.5 55 100.0
BraA02t08020Z Brassica rapa HOM05D002109 ORTHO05D002149 6.8e-23 110.5 57 96.5
Sp2g11340 Schrenkiella parvula HOM05D002109 ORTHO05D002149 2.5e-17 92.0 57 80.7
Carub.0008s0651 Capsella rubella HOM05D002109 ORTHO05D002149 1.7e-13 79.3 57 63.2
AL8G11820 Arabidopsis lyrata HOM05D002109 ORTHO05D002149 4.1e-12 74.7 57 61.4
Thhalv10017082m.g Eutrema salsugineum HOM05D002109 ORTHO05D002149 1.0e-10 70.1 57 61.4
Sp4g16970 Schrenkiella parvula HOM05D002109 ORTHO05D002149 2.9e-10 68.6 55 61.8
THA.LOC104812684 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 3.8e-10 68.2 55 60.0
A03p19240 Brassica napus HOM05D002109 ORTHO05D002149 8.6e-10 67.0 55 60.0
BraA03t11179Z Brassica rapa HOM05D002109 ORTHO05D002149 8.6e-10 67.0 55 60.0
C03p22440 Brassica napus HOM05D002109 ORTHO05D002149 1.1e-09 66.6 55 60.0
Carub.0004s1638 Capsella rubella HOM05D002109 ORTHO05D002149 1.1e-09 66.6 55 60.0
BolC3t14627H Brassica oleracea HOM05D002109 ORTHO05D002149 1.5e-09 66.2 55 60.0
THA.LOC104814320 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 1.5e-09 66.2 55 58.2
Gohir.A12G045533 Gossypium hirsutum HOM05D002109 ORTHO05D002149 1.9e-09 65.9 55 60.0
TAR626G0561 Trochodendron aralioides HOM05D002109 ORTHO05D002149 3.3e-09 65.1 55 60.0
Sed0010614 Sechium edule HOM05D002109 ORTHO05D002149 4.3e-09 64.7 57 54.4
AL4G30680 Arabidopsis lyrata HOM05D002109 ORTHO05D002149 5.6e-09 64.3 55 58.2
BcaC01g05782 Brassica carinata HOM05D002109 ORTHO05D002149 5.6e-09 64.3 55 58.2
CARHR128820 Cardamine hirsuta HOM05D002109 ORTHO05D002149 5.6e-09 64.3 55 58.2
COL.COLO4_17683 Corchorus olitorius HOM05D002109 ORTHO05D002149 7.3e-09 63.9 55 58.2
Sabra06G0036400 Salix brachista HOM05D002109 ORTHO05D002149 7.3e-09 63.9 55 56.4
Thecc.02G012400 Theobroma cacao HOM05D002109 ORTHO05D002149 7.3e-09 63.9 55 58.2
TAR624G0261 Trochodendron aralioides HOM05D002109 ORTHO05D002149 7.3e-09 63.9 57 57.9
AT2G34690 Arabidopsis thaliana HOM05D002109 ORTHO05D002149 9.5e-09 63.5 55 58.2
Duzib132G1017 Durio zibethinus HOM05D002109 ORTHO05D002149 9.5e-09 63.5 55 58.2
Sc17g0004660 Simmondsia chinensis HOM05D002109 ORTHO05D002149 9.5e-09 63.5 55 58.2
AUR62012827 Chenopodium quinoa HOM05D002109 ORTHO05D002149 1.2e-08 63.2 57 54.4
Manes.14G122400 Manihot esculenta HOM05D002109 ORTHO05D002149 1.2e-08 63.2 55 58.2
TWI09G1384 Tripterygium wilfordii HOM05D002109 ORTHO05D002149 1.2e-08 63.2 57 56.1
ClCG09G008840 Citrullus lanatus HOM05D002109 ORTHO05D002149 1.6e-08 62.8 57 52.6
MELO3C021055.2 Cucumis melo HOM05D002109 ORTHO05D002149 1.6e-08 62.8 57 52.6
Gohir.D12G044600 Gossypium hirsutum HOM05D002109 ORTHO05D002149 1.6e-08 62.8 55 58.2
Gorai.008G046900 Gossypium raimondii HOM05D002109 ORTHO05D002149 1.6e-08 62.8 55 58.2
Nn3g20248 Nelumbo nucifera HOM05D002109 ORTHO05D002149 1.6e-08 62.8 55 56.4
Aa31LG10G6640 Aethionema arabicum HOM05D002109 ORTHO05D002149 2.1e-08 62.4 55 54.5
Potri.016G055300 Populus trichocarpa HOM05D002109 ORTHO05D002149 2.1e-08 62.4 55 54.5
Sabra16G0058000 Salix brachista HOM05D002109 ORTHO05D002149 2.1e-08 62.4 55 54.5
CSS0038948 Camellia sinensis var. sinensis HOM05D002109 ORTHO05D002149 2.8e-08 62.0 57 57.9
FAN21G2409 Fragaria x ananassa HOM05D002109 ORTHO05D002149 2.8e-08 62.0 60 51.7
EL10Ac8g20232 Beta vulgaris HOM05D002109 ORTHO05D002149 3.6e-08 61.6 57 50.9
CsaV3_7G026030 Cucumis sativus L. HOM05D002109 ORTHO05D002149 3.6e-08 61.6 57 50.9
MD05G1274400 Malus domestica HOM05D002109 ORTHO05D002149 3.6e-08 61.6 55 56.4
Potri.006G051800 Populus trichocarpa HOM05D002109 ORTHO05D002149 3.6e-08 61.6 55 54.5
Atru.chr10.893 Acer truncatum HOM05D002109 ORTHO05D002149 4.7e-08 61.2 57 57.9
Ah.14g087480 Amaranthus hybridus HOM05D002109 ORTHO05D002149 4.7e-08 61.2 57 49.1
FvH4_3g09960 Fragaria vesca HOM05D002109 ORTHO05D002149 4.7e-08 61.2 55 54.5
FAN25G2973 Fragaria x ananassa HOM05D002109 ORTHO05D002149 4.7e-08 61.2 55 54.5
QL05p053263 Quercus lobata HOM05D002109 ORTHO05D002149 4.7e-08 61.2 58 53.4
Haze_05772 Corylus avellana HOM05D002109 ORTHO05D002149 6.1e-08 60.8 57 54.4
Psat1g168600 Pisum sativum HOM05D002109 ORTHO05D002149 6.1e-08 60.8 58 56.9
GSVIVG01021615001 Vitis vinifera HOM05D002109 ORTHO05D002149 6.1e-08 60.8 57 50.9
RcHm_v2.0_Chr5g0015711 Rosa chinensis HOM05D002109 ORTHO05D002149 1.0e-07 60.1 55 54.5
Aqoxy1G01644 Aquilegia oxysepala HOM05D002109 ORTHO05D002149 1.4e-07 59.7 55 52.7
HPP92_017712 Vanilla planifolia HOM05D002109 ORTHO05D002149 1.4e-07 59.7 55 54.5
CANSAT35G1726 Cannabis sativa HOM05D002109 ORTHO05D002149 1.8e-07 59.3 57 52.6
CiPaw.09G116000 Carya illinoinensis HOM05D002109 ORTHO05D002149 1.8e-07 59.3 55 52.7
Prupe.4G089300 Prunus persica HOM05D002109 ORTHO05D002149 1.8e-07 59.3 55 50.9
TWI73G0873 Tripterygium wilfordii HOM05D002109 ORTHO05D002149 2.3e-07 58.9 62 51.6
Cpa.g.sc17.96 Carica papaya HOM05D002109 ORTHO05D002149 3.0e-07 58.5 55 54.5
Glyma.09G022100 Glycine max HOM05D002109 ORTHO05D002149 3.0e-07 58.5 58 53.4
Dinv15917 Davidia involucrata HOM05D002109 ORTHO05D002149 4.0e-07 58.2 59 52.5
PSO675G0854 Papaver somniferum HOM05D002109 ORTHO05D002149 4.0e-07 58.2 55 54.5
PGR031G1251 Punica granatum HOM05D002109 ORTHO05D002149 4.0e-07 58.2 60 53.3
Cfa000833 Carpinus fangiana HOM05D002109 ORTHO05D002149 5.2e-07 57.8 57 50.9
MD10G1254100 Malus domestica HOM05D002109 ORTHO05D002149 5.2e-07 57.8 55 54.5
PSO541G4444 Papaver somniferum HOM05D002109 ORTHO05D002149 5.2e-07 57.8 55 54.5
Thhalv10001224m.g Eutrema salsugineum HOM05D002109 ORTHO05D002149 6.8e-07 57.4 46 56.5
Ciclev10016636m.g Citrus clementina HOM05D002109 ORTHO05D002149 8.9e-07 57.0 52 55.8
AL8G11880 Arabidopsis lyrata HOM05D002109 ORTHO05D002149 1.5e-06 56.2 54 53.7
Lj6g0010433 Lotus japonicus HOM05D002109 ORTHO05D002149 1.5e-06 56.2 56 53.6
MBI02_g11455_MAGBIO Magnolia biondii HOM05D002109 ORTHO05D002149 1.5e-06 56.2 55 49.1
Dinv15923 Davidia involucrata HOM05D002109 ORTHO05D002149 2.0e-06 55.8 59 50.8
ATR0686G237 Amborella trichopoda HOM05D002109 ORTHO05D002149 2.6e-06 55.5 55 47.3
Cc11_g10260 Coffea canephora HOM05D002109 ORTHO05D002149 2.6e-06 55.5 57 50.9
ATR0165G009 Amborella trichopoda HOM05D002109 ORTHO05D002149 3.4e-06 55.1 55 47.3
AL8G11850 Arabidopsis lyrata HOM05D002109 ORTHO05D002149 3.4e-06 55.1 54 53.7
HanXRQChr13g0400261 Helianthus annuus HOM05D002109 ORTHO05D002149 4.4e-06 54.7 59 45.8
Hma1.2p1_0333F.1_g128360 Hydrangea macrophylla HOM05D002109 ORTHO05D002149 4.4e-06 54.7 60 46.7
Eucgr.G00858 Eucalyptus grandis HOM05D002109 ORTHO05D002149 7.5e-06 53.9 52 53.8
Hma1.2p1_0406F.1_g146150 Hydrangea macrophylla HOM05D002109 ORTHO05D002149 7.5e-06 53.9 56 48.2
SalBow8G0961 Salvia bowleyana HOM05D002109 ORTHO05D002149 7.5e-06 53.9 57 52.6
SalBow8G1789 Salvia bowleyana HOM05D002109 ORTHO05D002149 7.5e-06 53.9 59 49.2
Dinv04480 Davidia involucrata HOM05D002109 ORTHO05D002149 9.8e-06 53.5 56 50.0


User provided reference genes

Program Settings