Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 6.6e-38 160.2 82 100.0
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 1.6e-36 155.6 82 97.6
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 7.1e-32 140.2 71 100.0
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 1.0e-30 136.3 71 97.2
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 1.5e-29 132.5 71 94.4
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 6.2e-28 127.1 71 88.7
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 8.1e-28 126.7 71 90.1
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 8.1e-28 126.7 71 90.1
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 8.1e-28 126.7 71 90.1
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 8.1e-28 126.7 71 90.1
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.8e-27 125.6 71 90.1
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 9.9e-26 119.8 72 87.5
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 4.9e-25 117.5 70 84.3
Carub.0008s0161 Capsella rubella HOM05D010376 ORTHO05D006663 3.9e-22 107.8 71 80.3
BolC9t57226H Brassica oleracea HOM05D010376 ORTHO05D006663 5.1e-22 107.5 74 75.7
BolC9t55718H Brassica oleracea HOM05D010376 ORTHO05D006663 5.6e-21 104.0 73 72.6
BraA02t08004Z Brassica rapa HOM05D010376 ORTHO05D006663 1.7e-17 92.4 48 97.9
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 9.3e-16 86.7 75 60.0
BolC2t10768H Brassica oleracea HOM05D010376 ORTHO05D006663 2.5e-13 78.6 71 64.8
A09p22230 Brassica napus HOM05D010376 ORTHO05D006663 4.0e-11 71.2 71 60.6
BraA09t37827Z Brassica rapa HOM05D010376 ORTHO05D006663 7.6e-10 67.0 71 56.3
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.0e-09 66.6 58 55.2
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.3e-09 66.2 54 55.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 1.3e-09 66.2 71 47.9
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.2e-09 65.5 59 54.2
C09p28390 Brassica napus HOM05D010376 ORTHO05D006663 2.9e-09 65.1 34 94.1
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.9e-09 65.1 59 52.5
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 3.8e-09 64.7 59 52.5
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.8e-09 64.7 77 46.8
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.0e-09 64.3 72 50.0
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 8.4e-09 63.5 68 52.9
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 5.5e-08 60.8 75 48.0
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 7.1e-08 60.5 76 44.7
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 2.1e-07 58.9 71 47.9
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.7e-07 58.5 59 47.5
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.7e-07 58.5 46 52.2
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 3.5e-07 58.2 79 44.3
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 3.5e-07 58.2 51 51.0
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 4.6e-07 57.8 64 48.4
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.1e-07 57.4 79 41.8
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.1e-07 57.4 62 48.4
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.1e-07 57.4 62 48.4
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 6.1e-07 57.4 50 46.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 6.1e-07 57.4 73 42.5
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 7.9e-07 57.0 76 46.1
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 7.9e-07 57.0 74 43.2
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 1.0e-06 56.6 79 43.0
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-06 55.8 74 45.9
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-06 55.8 62 46.8
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 2.3e-06 55.5 44 54.5
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 2.3e-06 55.5 46 50.0
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 3.0e-06 55.1 62 46.8
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 3.9e-06 54.7 44 50.0
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.9e-06 54.7 44 50.0
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.9e-06 54.7 44 50.0
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 3.9e-06 54.7 49 53.1
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 5.1e-06 54.3 75 41.3
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.7e-06 53.9 74 44.6
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 6.7e-06 53.9 49 53.1
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 8.7e-06 53.5 43 51.2
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 8.7e-06 53.5 70 38.6
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 8.7e-06 53.5 70 38.6
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 8.7e-06 53.5 45 53.3
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 8.7e-06 53.5 75 41.3


User provided reference genes

Program Settings