Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46740 Brassica napus HOM05D014293 ORTHO05D032501 1.6e-48 195.7 94 100.0
BolC2t10726H Brassica oleracea HOM05D001006 ORTHO05D032501 3.4e-30 134.8 67 94.0
BcaC03g16803 Brassica carinata HOM05D014293 ORTHO05D032501 9.9e-30 133.3 106 66.0
Thhalv10013958m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 1.1e-20 103.2 54 85.2
A10p07940 Brassica napus HOM05D001006 ORTHO05D000868 2.5e-20 102.1 54 87.0
BraSC35t46005Z Brassica rapa HOM05D001006 ORTHO05D000868 2.5e-20 102.1 54 87.0
BcaC04g20724 Brassica carinata HOM05D001006 ORTHO05D000868 9.3e-20 100.1 54 83.3
C09p39860 Brassica napus HOM05D001006 ORTHO05D000868 9.3e-20 100.1 54 83.3
BolC9t56885H Brassica oleracea HOM05D001006 ORTHO05D000868 9.3e-20 100.1 54 83.3
Sp6g13390 Schrenkiella parvula HOM05D001006 ORTHO05D000868 1.2e-19 99.8 54 83.3
Carub.0008s1122 Capsella rubella HOM05D001006 ORTHO05D000868 4.6e-19 97.8 54 79.6
AT5G51180 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 1.8e-18 95.9 54 77.8
CARHR256840 Cardamine hirsuta HOM05D001006 ORTHO05D000868 3.3e-17 91.7 50 82.0
Aa31LG3G7680 Aethionema arabicum HOM05D001006 ORTHO05D000868 7.4e-17 90.5 54 74.1
BcaB08g35477 Brassica carinata HOM05D001006 ORTHO05D000868 9.0e-15 83.6 40 90.0
THA.LOC104825052 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 6.5e-13 77.4 54 66.7
THA.LOC104811540 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 1.4e-12 76.3 54 63.0
CAN.G247.20 Capsicum annuum HOM05D001006 ORTHO05D000868 3.9e-10 68.2 79 45.6
DCAR_018077 Daucus carota HOM05D000640 ORTHO05D000849 5.1e-10 67.8 53 62.3
Medtr1g040460 Medicago truncatula HOM05D001006 ORTHO05D000868 1.1e-09 66.6 77 45.5
Ca_12322_v3 Cicer arietinum L. HOM05D001006 ORTHO05D000868 1.5e-09 66.2 56 58.9
Migut.O00370 Erythranthe guttata HOM05D001006 ORTHO05D000868 2.0e-09 65.9 73 47.9
TPR.G19129 Trifolium pratense HOM05D001006 ORTHO05D000868 2.0e-09 65.9 55 56.4
PGSC0003DMG400010748 Solanum tuberosum HOM05D001006 ORTHO05D000868 2.5e-09 65.5 54 57.4
ECA233G2066 Erigeron canadensis HOM05D001006 ORTHO05D000868 3.3e-09 65.1 50 56.0
Lj6g0003414 Lotus japonicus HOM05D001006 ORTHO05D000868 3.3e-09 65.1 55 54.5
Ciclev10005243m.g Citrus clementina HOM05D001006 ORTHO05D000868 4.3e-09 64.7 53 62.3
BcaC03g17884 Brassica carinata HOM05D014293 ORTHO05D018629 5.7e-09 64.3 32 96.9
CSS0030582 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D000868 5.7e-09 64.3 53 56.6
Nitab4.5_0010756g0030 Nicotiana tabacum HOM05D001006 ORTHO05D000868 7.4e-09 63.9 79 44.3
Psat6g049800 Pisum sativum HOM05D001006 ORTHO05D000868 7.4e-09 63.9 55 56.4
Ah.13g066220 Amaranthus hybridus HOM05D001006 ORTHO05D000868 9.7e-09 63.5 50 54.0
Cc02_g04710 Coffea canephora HOM05D001006 ORTHO05D000868 9.7e-09 63.5 53 58.5
Migut.F00524 Erythranthe guttata HOM05D001006 ORTHO05D000868 9.7e-09 63.5 52 59.6
Nitab4.5_0003173g0020 Nicotiana tabacum HOM05D001006 ORTHO05D000868 9.7e-09 63.5 53 56.6
Nitab4.5_0012028g0010 Nicotiana tabacum HOM05D001006 ORTHO05D000868 9.7e-09 63.5 53 56.6
Peaxi162Scf00167g00810 Petunia axillaris HOM05D001006 ORTHO05D000868 9.7e-09 63.5 53 56.6
HanXRQChr07g0205551 Helianthus annuus HOM05D001006 ORTHO05D000868 1.3e-08 63.2 50 58.0
arahy.Tifrunner.gnm1.ann1.D1TJ11 Arachis hypogaea HOM05D001006 ORTHO05D000868 1.7e-08 62.8 55 54.5
Oeu044195.1 Olea europaea HOM05D001006 ORTHO05D000868 1.7e-08 62.8 53 56.6
Hund11853 Selenicereus undatus HOM05D001006 ORTHO05D000868 1.7e-08 62.8 51 56.9
Solyc05g052020.3 Solanum lycopersicum HOM05D001006 ORTHO05D000868 2.2e-08 62.4 53 54.7
Cpa.g.sc13.256 Carica papaya HOM05D001006 ORTHO05D000868 2.8e-08 62.0 57 54.4
Lsat_1_v5_gn_8_9640 Lactuca sativa HOM05D001006 ORTHO05D000868 2.8e-08 62.0 51 56.9
Peaxi162Scf00271g00614 Petunia axillaris HOM05D001006 ORTHO05D000868 2.8e-08 62.0 53 54.7
Solyc03g093510.2 Solanum lycopersicum HOM05D001006 ORTHO05D000868 2.8e-08 62.0 54 55.6
Atru.chr1.915 Acer truncatum HOM05D001006 ORTHO05D000868 3.7e-08 61.6 58 56.9
Duzib084G1087 Durio zibethinus HOM05D001006 ORTHO05D000868 3.7e-08 61.6 54 53.7
Sopen05g030570 Solanum pennellii HOM05D001006 ORTHO05D000868 3.7e-08 61.6 53 54.7
BcaC06g35869 Brassica carinata HOM05D014293 ORTHO05D018629 4.8e-08 61.2 32 90.6
Gorai.008G214100 Gossypium raimondii HOM05D001006 ORTHO05D000868 4.8e-08 61.2 58 50.0
Manes.06G131400 Manihot esculenta HOM05D001006 ORTHO05D000868 6.3e-08 60.8 53 52.8
Hund04564 Selenicereus undatus HOM05D001006 ORTHO05D000868 6.3e-08 60.8 51 54.9
Sopen03g024330 Solanum pennellii HOM05D001006 ORTHO05D000868 6.3e-08 60.8 54 53.7
COL.COLO4_37341 Corchorus olitorius HOM05D001006 ORTHO05D000868 8.2e-08 60.5 58 48.3
MSTRG.27219 Avicennia marina HOM05D001006 ORTHO05D000868 1.1e-07 60.1 51 52.9
Gohir.A03G059900 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.1e-07 60.1 54 51.9
Gohir.D03G106100 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.1e-07 60.1 54 51.9
Gorai.003G112300 Gossypium raimondii HOM05D001006 ORTHO05D000868 1.1e-07 60.1 54 51.9
Oeu006089.1 Olea europaea HOM05D001006 ORTHO05D000868 1.1e-07 60.1 52 51.9
CAN.G296.12 Capsicum annuum HOM05D001006 ORTHO05D000868 1.4e-07 59.7 79 41.8
Gohir.A12G196600 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.4e-07 59.7 58 48.3
HanXRQChr08g0223221 Helianthus annuus HOM05D001006 ORTHO05D000868 1.4e-07 59.7 50 50.0
PGSC0003DMG400026888 Solanum tuberosum HOM05D001006 ORTHO05D000868 1.4e-07 59.7 53 52.8
GSVIVG01013965001 Vitis vinifera HOM05D001006 ORTHO05D000868 1.4e-07 59.7 53 52.8
CANSAT56G3401 Cannabis sativa HOM05D001006 ORTHO05D000868 1.8e-07 59.3 52 55.8
ECA238G1446 Erigeron canadensis HOM05D001006 ORTHO05D000868 1.8e-07 59.3 49 51.0
Rhsim03G0161400 Rhododendron simsii HOM05D001006 ORTHO05D000868 1.8e-07 59.3 54 57.4
Sabra01G0056900 Salix brachista HOM05D001006 ORTHO05D000868 1.8e-07 59.3 53 50.9
Sabra03G0109500 Salix brachista HOM05D001006 ORTHO05D000868 1.8e-07 59.3 52 48.1
arahy.Tifrunner.gnm1.ann1.ZCFB2D Arachis hypogaea HOM05D001006 ORTHO05D000868 2.4e-07 58.9 49 57.1
EL10Ac3g05879 Beta vulgaris HOM05D001006 ORTHO05D000868 2.4e-07 58.9 51 51.0
QL09p027977 Quercus lobata HOM05D001006 ORTHO05D000868 2.4e-07 58.9 53 50.9
BcaB02g08449 Brassica carinata HOM05D001346 ORTHO05D001205 3.1e-07 58.5 77 46.8
MD01G1177400 Malus domestica HOM05D001006 ORTHO05D000868 3.1e-07 58.5 53 52.8
Potri.003G151300 Populus trichocarpa HOM05D001006 ORTHO05D000868 3.1e-07 58.5 53 49.1
Thecc.03G148900 Theobroma cacao HOM05D001006 ORTHO05D000868 3.1e-07 58.5 58 48.3
Dinv16865 Davidia involucrata HOM05D001006 ORTHO05D000868 4.1e-07 58.2 79 41.8
Duzib205G1749 Durio zibethinus HOM05D001006 ORTHO05D000868 4.1e-07 58.2 54 50.0
Hma1.2p1_1305F.1_g274610 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 4.1e-07 58.2 53 52.8
Lj1A976G66 Lonicera japonica HOM05D001006 ORTHO05D000868 4.1e-07 58.2 54 53.7
Lalb_Chr03g0036541 Lupinus albus HOM05D001006 ORTHO05D000868 4.1e-07 58.2 55 49.1
MBI04_g07211_MAGBIO Magnolia biondii HOM05D001006 ORTHO05D000868 4.1e-07 58.2 53 56.6
Oeu042532.1 Olea europaea HOM05D000784 ORTHO05D000868 4.1e-07 58.2 53 52.8
RcHm_v2.0_Chr1g0373671 Rosa chinensis HOM05D001006 ORTHO05D000868 4.1e-07 58.2 53 54.7
MSTRG.8847 Avicennia marina HOM05D001006 ORTHO05D000868 5.3e-07 57.8 52 51.9
Aqoxy3G02755 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 6.9e-07 57.4 51 54.9
CSS0010849 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D000868 6.9e-07 57.4 53 52.8
AUR62002242 Chenopodium quinoa HOM05D001006 ORTHO05D000868 6.9e-07 57.4 50 56.0
MD07G1249100 Malus domestica HOM05D001006 ORTHO05D000868 6.9e-07 57.4 53 50.9
PGR142G2161 Punica granatum HOM05D001006 ORTHO05D000868 6.9e-07 57.4 53 54.7
TWI39G1024 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 6.9e-07 57.4 53 54.7
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.2e-06 56.6 53 52.8
Rhsim09G0190000 Rhododendron simsii HOM05D001006 ORTHO05D000868 1.2e-06 56.6 56 51.8
Gohir.D12G199000 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.5e-06 56.2 58 48.3
CsaV3_4G004190 Cucumis sativus L. HOM05D001006 ORTHO05D000868 2.0e-06 55.8 53 47.2
FvH4_7g26960 Fragaria vesca HOM05D001006 ORTHO05D000868 2.0e-06 55.8 53 52.8
Hma1.2p1_1580F.1_g291920 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 2.0e-06 55.8 53 49.1
Sc19g0002140 Simmondsia chinensis HOM05D001006 ORTHO05D000868 2.0e-06 55.8 53 49.1
TWI14G0311 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 2.0e-06 55.8 53 52.8
unitig_0.g2510 Utricularia gibba HOM05D001006 ORTHO05D000868 2.0e-06 55.8 51 49.0
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.6e-06 55.5 51 51.0
MELO3C017647.2 Cucumis melo HOM05D001006 ORTHO05D000868 3.4e-06 55.1 53 47.2
FAN06G0481 Fragaria x ananassa HOM05D001006 ORTHO05D000868 3.4e-06 55.1 60 48.3
Manes.14G038700 Manihot esculenta HOM05D001006 ORTHO05D000868 3.4e-06 55.1 58 44.8
vmacro09920 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 3.4e-06 55.1 53 50.9
Glyma.10G119200 Glycine max HOM05D001006 ORTHO05D000868 4.5e-06 54.7 51 56.9
Glyma.20G070200 Glycine max HOM05D001006 ORTHO05D000868 4.5e-06 54.7 50 54.0
Sp5g07830 Schrenkiella parvula HOM05D001346 ORTHO05D001205 4.5e-06 54.7 67 47.8
Sed0025613 Sechium edule HOM05D001006 ORTHO05D000868 4.5e-06 54.7 53 49.1
BolC4t25369H Brassica oleracea HOM05D001346 ORTHO05D001205 5.9e-06 54.3 33 84.8
FAN10G4348 Fragaria x ananassa HOM05D000640 ORTHO05D000849 5.9e-06 54.3 56 50.0
Potri.001G079400 Populus trichocarpa HOM05D001006 ORTHO05D000868 5.9e-06 54.3 53 47.2
Sed0002843 Sechium edule HOM05D001006 ORTHO05D000868 5.9e-06 54.3 50 54.0
vmacro06836 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 5.9e-06 54.3 60 46.7
CiPaw.07G185200 Carya illinoinensis HOM05D001006 ORTHO05D000868 7.7e-06 53.9 53 49.1
unitig_578.g16616 Utricularia gibba HOM05D001006 ORTHO05D000868 7.7e-06 53.9 52 46.2


User provided reference genes

Program Settings