Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46640 Brassica napus HOM05D009484 ORTHO05D011605 3.9e-230 801.2 434 100.0
BolC2t10719H Brassica oleracea HOM05D009484 ORTHO05D011605 5.0e-225 784.3 434 98.4
BraA02t07967Z Brassica rapa HOM05D009484 ORTHO05D011605 3.2e-216 755.0 440 93.6
A02p29400 Brassica napus HOM05D009484 ORTHO05D011605 1.0e-214 750.0 440 93.0
BcaC03g16792 Brassica carinata HOM05D009484 ORTHO05D011605 2.6e-210 735.3 406 98.8
BcaB07g30428 Brassica carinata HOM05D009484 ORTHO05D011605 5.8e-173 611.3 412 82.0
Sp2g10770 Schrenkiella parvula HOM05D009484 ORTHO05D011605 1.1e-152 543.9 446 70.0
AL8G12720 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 1.3e-127 460.7 454 62.1
AT5G45850 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 3.7e-127 459.1 453 60.5
Carub.0008s0211 Capsella rubella HOM05D009484 ORTHO05D011605 5.7e-112 408.7 449 56.6
Thhalv10000904m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 2.4e-110 403.3 350 67.1
CARHR176120 Cardamine hirsuta HOM05D009484 ORTHO05D011605 6.9e-110 401.7 438 58.4
AT4G18630 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 8.6e-52 208.8 501 36.9
Sp7g15390 Schrenkiella parvula HOM05D009484 ORTHO05D011605 8.3e-47 192.2 497 35.6
CARHR225490 Cardamine hirsuta HOM05D009484 ORTHO05D011605 1.1e-46 191.8 499 36.3
A03p51460 Brassica napus HOM05D009484 ORTHO05D011605 2.4e-46 190.7 484 37.2
BraA03t14229Z Brassica rapa HOM05D009484 ORTHO05D011605 2.4e-46 190.7 484 37.2
C07p49890 Brassica napus HOM05D009484 ORTHO05D011605 3.2e-46 190.3 488 36.1
Carub.0007s2259 Capsella rubella HOM05D009484 ORTHO05D011605 9.2e-46 188.7 502 36.7
BraA01t01013Z Brassica rapa HOM05D009484 ORTHO05D011605 2.1e-45 187.6 498 36.5
AL7G35630 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 2.7e-45 187.2 501 36.1
C01p12590 Brassica napus HOM05D009484 ORTHO05D011605 2.7e-45 187.2 497 36.6
BolC7t45490H Brassica oleracea HOM05D009484 ORTHO05D011605 4.6e-45 186.4 481 36.0
A01p10670 Brassica napus HOM05D009484 ORTHO05D011605 7.8e-45 185.7 498 36.9
BolC1t01236H Brassica oleracea HOM05D009484 ORTHO05D011605 1.0e-44 185.3 494 36.0
Thhalv10025107m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 7.3e-43 179.1 490 35.5
THA.LOC104798428 Tarenaya hassleriana HOM05D009484 ORTHO05D011605 3.6e-42 176.8 536 33.8
BcaNung02666 Brassica carinata HOM05D009484 ORTHO05D011605 6.8e-41 172.6 478 35.1
Aa31LG9G7210 Aethionema arabicum HOM05D009484 ORTHO05D011605 1.9e-27 127.9 214 44.4
Aa31LG6G1380 Aethionema arabicum HOM05D009484 ORTHO05D011605 1.7e-23 114.8 315 34.0
CSS0018909 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 1.5e-11 75.1 520 26.2
CSS0048552 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 2.5e-11 74.3 520 26.2
Hund09960 Selenicereus undatus HOM05D002063 ORTHO05D002075 2.5e-11 74.3 415 25.5
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 9.6e-11 72.4 87 55.2
Hund21171 Selenicereus undatus HOM05D002063 ORTHO05D002075 3.7e-10 70.5 464 24.6
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 6.2e-10 69.7 86 48.8
Migut.M01031 Erythranthe guttata HOM05D002063 ORTHO05D002075 6.2e-10 69.7 422 27.3
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 8.1e-10 69.3 350 25.4
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 1.4e-09 68.6 97 46.4
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 1.8e-09 68.2 82 50.0
BraA07t28875Z Brassica rapa HOM05D002063 ORTHO05D002075 2.4e-09 67.8 511 26.6
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 2.4e-09 67.8 88 50.0
AT2G34170 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 4.0e-09 67.0 193 33.7
CAN.G1081.10 Capsicum annuum HOM05D002063 ORTHO05D002075 5.3e-09 66.6 77 42.9
Duzib192G1071 Durio zibethinus HOM05D002063 ORTHO05D002075 5.3e-09 66.6 90 47.8
CAN.G370.91 Capsicum annuum HOM05D002063 ORTHO05D002075 9.0e-09 65.9 97 44.3
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 9.0e-09 65.9 80 53.8
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 9.0e-09 65.9 80 53.8
A08p25230 Brassica napus HOM05D002063 ORTHO05D002075 1.2e-08 65.5 528 25.8
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 1.2e-08 65.5 80 53.8
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 1.2e-08 65.5 110 42.7
BcaB03g13896 Brassica carinata HOM05D002063 ORTHO05D002075 1.5e-08 65.1 508 26.0
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 1.5e-08 65.1 457 26.7
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 1.5e-08 65.1 457 26.7
MELO3C002658.2 Cucumis melo HOM05D002063 ORTHO05D002075 1.5e-08 65.1 86 46.5
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 2.0e-08 64.7 81 45.7
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 2.0e-08 64.7 82 48.8
Solyc02g076680.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 2.0e-08 64.7 90 47.8
A07p10850 Brassica napus HOM05D002063 ORTHO05D002075 2.6e-08 64.3 484 26.7
ClCG03G007640 Citrullus lanatus HOM05D002063 ORTHO05D002075 2.6e-08 64.3 83 48.2
Sopen02g021610 Solanum pennellii HOM05D002063 ORTHO05D002075 3.4e-08 63.9 100 44.0
PGSC0003DMG400010231 Solanum tuberosum HOM05D002063 ORTHO05D002075 3.4e-08 63.9 100 44.0
Cc05_g08420 Coffea canephora HOM05D002063 ORTHO05D002075 4.5e-08 63.5 82 43.9
CsaV3_1G033290 Cucumis sativus L. HOM05D002063 ORTHO05D001117 5.8e-08 63.2 83 48.2
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 5.8e-08 63.2 81 49.4
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 5.8e-08 63.2 85 45.9
Sed0012556 Sechium edule HOM05D002063 ORTHO05D002075 5.8e-08 63.2 80 47.5
CANSAT54G0797 Cannabis sativa HOM05D002063 ORTHO05D002075 7.6e-08 62.8 81 45.7
MELO3C013577.2 Cucumis melo HOM05D002063 ORTHO05D002075 7.6e-08 62.8 250 27.6
Gohir.D05G157400 Gossypium hirsutum HOM05D002063 ORTHO05D002075 7.6e-08 62.8 97 43.3
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 7.6e-08 62.8 80 45.0
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 7.6e-08 62.8 82 50.0
Gorai.009G161900 Gossypium raimondii HOM05D002063 ORTHO05D002075 1.0e-07 62.4 97 43.3
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 1.0e-07 62.4 197 31.0
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 1.0e-07 62.4 106 41.5
Atru.chr6.2786 Acer truncatum HOM05D002063 ORTHO05D002075 1.3e-07 62.0 228 28.5
Ca_00441_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 1.3e-07 62.0 72 48.6
Lalb_Chr07g0186431 Lupinus albus HOM05D002063 ORTHO05D002075 1.3e-07 62.0 84 44.0
PGSC0003DMG400020440 Solanum tuberosum HOM05D002063 ORTHO05D002075 1.3e-07 62.0 96 35.4
BcaB03g12147 Brassica carinata HOM05D002063 ORTHO05D002075 1.7e-07 61.6 83 49.4
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 1.7e-07 61.6 88 43.2
MD17G1266300 Malus domestica HOM05D002063 ORTHO05D002075 1.7e-07 61.6 81 46.9
TWI60G0150 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 1.7e-07 61.6 171 35.1
CSS0039343 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 2.2e-07 61.2 130 38.5
CiPaw.10G059700 Carya illinoinensis HOM05D002063 ORTHO05D002075 2.2e-07 61.2 81 43.2
AL1G42960 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 2.9e-07 60.8 184 30.4
Dinv16781 Davidia involucrata HOM05D002063 ORTHO05D002075 2.9e-07 60.8 82 43.9
Nitab4.5_0006324g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 2.9e-07 60.8 102 43.1
Sopen07g027090 Solanum pennellii HOM05D002063 ORTHO05D002075 2.9e-07 60.8 96 35.4
Aa31LG9G13950 Aethionema arabicum HOM05D002063 ORTHO05D002075 3.8e-07 60.5 124 35.5
AL4G30070 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 3.8e-07 60.5 191 30.4
PGR042G2756 Punica granatum HOM05D002063 ORTHO05D002075 3.8e-07 60.5 177 33.9
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 4.9e-07 60.1 411 26.5
Manes.17G056500 Manihot esculenta HOM05D002063 ORTHO05D002075 4.9e-07 60.1 108 43.5
Nn1g04435 Nelumbo nucifera HOM05D002063 ORTHO05D002075 4.9e-07 60.1 85 48.2
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 4.9e-07 60.1 75 45.3
Aa31LG5G5900 Aethionema arabicum HOM05D002063 ORTHO05D002075 6.5e-07 59.7 426 24.4
arahy.Tifrunner.gnm1.ann1.V8BLVD Arachis hypogaea HOM05D002063 ORTHO05D002075 6.5e-07 59.7 73 49.3
Carub.0001s2741 Capsella rubella HOM05D002063 ORTHO05D002075 6.5e-07 59.7 189 29.6
CARHR028530 Cardamine hirsuta HOM05D002063 ORTHO05D002075 6.5e-07 59.7 82 46.3
Glyma.08G116800 Glycine max HOM05D002063 ORTHO05D002075 6.5e-07 59.7 82 43.9
Rhsim02G0143400 Rhododendron simsii HOM05D002063 ORTHO05D002075 6.5e-07 59.7 104 43.3
AT1G29240 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 8.4e-07 59.3 453 26.0
Cfa023598 Carpinus fangiana HOM05D002063 ORTHO05D002075 8.4e-07 59.3 151 31.1
Ca_17915_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 8.4e-07 59.3 391 23.8
Ciclev10014575m.g Citrus clementina HOM05D002063 ORTHO05D002075 8.4e-07 59.3 147 32.0
Lj2A302T59 Lonicera japonica HOM05D002063 ORTHO05D002075 8.4e-07 59.3 80 48.8
MBI07_g09571_MAGBIO Magnolia biondii HOM05D002063 ORTHO05D002075 8.4e-07 59.3 84 44.0
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 8.4e-07 59.3 90 44.4
TPR.G11764 Trifolium pratense HOM05D002063 ORTHO05D002075 8.4e-07 59.3 88 44.3
Dinv40689 Davidia involucrata HOM05D002063 ORTHO05D002075 1.1e-06 58.9 152 29.6
Medtr2g016190 Medicago truncatula HOM05D002063 ORTHO05D002075 1.1e-06 58.9 83 44.6
Prupe.3G117500 Prunus persica HOM05D002063 ORTHO05D002075 1.1e-06 58.9 77 45.5
C04p14980 Brassica napus HOM05D002063 ORTHO05D002075 1.4e-06 58.5 164 35.4
BolC4t23072H Brassica oleracea HOM05D002063 ORTHO05D002075 1.4e-06 58.5 164 35.4
BraA08t34475Z Brassica rapa HOM05D002063 ORTHO05D002075 1.4e-06 58.5 83 45.8
Glyma.15G083500 Glycine max HOM05D002063 ORTHO05D002075 1.4e-06 58.5 226 28.3
MD09G1236600 Malus domestica HOM05D002063 ORTHO05D002075 1.4e-06 58.5 79 45.6
Nitab4.5_0006875g0040 Nicotiana tabacum HOM05D002063 ORTHO05D002075 1.4e-06 58.5 98 35.7
Psat1g197800 Pisum sativum HOM05D002063 ORTHO05D002075 1.4e-06 58.5 94 39.4
Psat7g070160 Pisum sativum HOM05D002063 ORTHO05D002075 1.4e-06 58.5 74 44.6
Peaxi162Scf00940g00038 Petunia axillaris HOM05D002063 ORTHO05D002075 1.9e-06 58.2 105 40.0
Phvul.002G239200 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 1.9e-06 58.2 82 43.9
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 2.5e-06 57.8 73 46.6
C07p16460 Brassica napus HOM05D002063 ORTHO05D002075 2.5e-06 57.8 110 39.1
Sabra11G0048600 Salix brachista HOM05D002063 ORTHO05D002075 2.5e-06 57.8 87 44.8
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 2.5e-06 57.8 90 41.1
EL10Ac8g20589 Beta vulgaris HOM05D002063 ORTHO05D002075 3.2e-06 57.4 176 27.8
BcaC06g35413 Brassica carinata HOM05D002063 ORTHO05D002075 3.2e-06 57.4 110 39.1
CARHR128260 Cardamine hirsuta HOM05D002063 ORTHO05D002075 3.2e-06 57.4 82 46.3
Cc02_g15110 Coffea canephora HOM05D002063 ORTHO05D002075 3.2e-06 57.4 152 29.6
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 3.2e-06 57.4 240 25.4
Duzib147G0122 Durio zibethinus HOM05D002063 ORTHO05D002075 3.2e-06 57.4 183 27.9
HanXRQChr16g0518671 Helianthus annuus HOM05D002063 ORTHO05D002075 3.2e-06 57.4 77 48.1
Lsat_1_v5_gn_4_49001 Lactuca sativa HOM05D002063 ORTHO05D002075 3.2e-06 57.4 492 23.0
MD05G1299600 Malus domestica HOM05D002063 ORTHO05D002075 3.2e-06 57.4 182 30.2
Oeu039912.2 Olea europaea HOM05D002063 ORTHO05D002075 3.2e-06 57.4 85 47.1
BolC7t42142H Brassica oleracea HOM05D002063 ORTHO05D002075 4.2e-06 57.0 82 43.9
FAN16G0090 Fragaria x ananassa HOM05D002063 ORTHO05D002075 4.2e-06 57.0 251 28.3
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 4.2e-06 57.0 406 23.6
Nitab4.5_0000605g0110 Nicotiana tabacum HOM05D002063 ORTHO05D002075 4.2e-06 57.0 152 35.5
CSS0038617 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 5.5e-06 56.6 121 36.4
AUR62031220 Chenopodium quinoa HOM05D002063 ORTHO05D002075 5.5e-06 56.6 168 28.0
Haze_06218 Corylus avellana HOM05D002063 ORTHO05D002075 5.5e-06 56.6 148 32.4
MD10G1278900 Malus domestica HOM05D002063 ORTHO05D002075 5.5e-06 56.6 181 28.2
PSO229G0031 Papaver somniferum HOM05D002063 ORTHO05D002075 5.5e-06 56.6 72 50.0
FAN25G1222 Fragaria x ananassa HOM05D002063 ORTHO05D002075 7.1e-06 56.2 251 27.9
Manes.01G132600 Manihot esculenta HOM05D002063 ORTHO05D002075 7.1e-06 56.2 77 42.9
Thecc.01G151300 Theobroma cacao HOM05D002063 ORTHO05D002075 7.1e-06 56.2 72 47.2
Aa31LG6G6300 Aethionema arabicum HOM05D002063 ORTHO05D002075 9.3e-06 55.8 178 30.3
CsaV3_7G005700 Cucumis sativus L. HOM05D002063 ORTHO05D002075 9.3e-06 55.8 179 29.6
Lalb_Chr18g0054571 Lupinus albus HOM05D002063 ORTHO05D002075 9.3e-06 55.8 86 46.5
Oeu024445.3 Olea europaea HOM05D002063 ORTHO05D002075 9.3e-06 55.8 154 33.8
VMungo0251G3479 Vigna mungo HOM05D002063 ORTHO05D002075 9.3e-06 55.8 74 43.2


User provided reference genes

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