Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46500 Brassica napus HOM05D028915 ORTHO05D027093 3.9e-51 204.5 105 100.0
BolC7t43288H Brassica oleracea HOM05D028915 ORTHO05D027093 8.8e-19 97.1 57 87.7
BcaC04g18879 Brassica carinata HOM05D028915 ORTHO05D027093 5.7e-18 94.4 48 97.9
BraA06t26119Z Brassica rapa HOM05D028915 ORTHO05D027093 4.2e-13 78.2 52 80.8
AL1G60880 Arabidopsis lyrata HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
AT1G52600 Arabidopsis thaliana HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BcaB02g10979 Brassica carinata HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BcaC08g43435 Brassica carinata HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BcaC08g44006 Brassica carinata HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
C06p08030 Brassica napus HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
C06p14170 Brassica napus HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BolC6t35886H Brassica oleracea HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BraA05t20784Z Brassica rapa HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
BraA06t23392Z Brassica rapa HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
Carub.0001s4160 Capsella rubella HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
CARHR042730 Cardamine hirsuta HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
Thhalv10011816m.g Eutrema salsugineum HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
Sp1g39160 Schrenkiella parvula HOM05D001962 ORTHO05D002236 3.1e-08 62.0 69 55.1
Sc12g0008700 Simmondsia chinensis HOM05D001962 ORTHO05D002236 4.1e-08 61.6 67 55.2
CBR_g8987 Chara braunii HOM05D001962 ORTHO05D002236 5.4e-08 61.2 67 55.2
THA.LOC104815534 Tarenaya hassleriana HOM05D001962 ORTHO05D002236 5.4e-08 61.2 67 55.2
SGA_v2.0_scaffold19G08788 Striga asiatica HOM05D001962 ORTHO05D002236 7.0e-08 60.8 70 52.9
A05p18870 Brassica napus HOM05D001962 ORTHO05D002236 9.2e-08 60.5 69 53.6
CsaV3_7G032500 Cucumis sativus L. HOM05D001962 ORTHO05D002236 9.2e-08 60.5 67 53.7
Aa31LG10G2410 Aethionema arabicum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 69 52.2
Aa31LG5G20770 Aethionema arabicum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 69 52.2
Glyma.06G310200 Glycine max HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Lj3g0005084 Lotus japonicus HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Lj3g0006138 Lotus japonicus HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Nitab4.5_0005139g0040 Nicotiana tabacum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Peaxi162Scf00984g00024 Petunia axillaris HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Prupe.3G083100 Prunus persica HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Solyc12g006540.2 Solanum lycopersicum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Sopen12g002490 Solanum pennellii HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
PGSC0003DMG401018963 Solanum tuberosum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
PGSC0003DMG402018963 Solanum tuberosum HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
TWI18G1318 Tripterygium wilfordii HOM05D001962 ORTHO05D002236 1.2e-07 60.1 67 55.2
Atru.chr1.3041 Acer truncatum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
arahy.Tifrunner.gnm1.ann1.AP5PRQ Arachis hypogaea HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
arahy.Tifrunner.gnm1.ann1.LPE59Q Arachis hypogaea HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
CAN.G594.19 Capsicum annuum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Cfa001981 Carpinus fangiana HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
CiPaw.01G245900 Carya illinoinensis HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Ca_01064_v3 Cicer arietinum L. HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
ClCG07G012720 Citrullus lanatus HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Ciclev10026591m.g Citrus clementina HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
COL.COLO4_12926 Corchorus olitorius HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Haze_16532 Corylus avellana HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
MELO3C017891.2 Cucumis melo HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
CsaV3_4G001480 Cucumis sativus L. HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Duzib235G1117 Durio zibethinus HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Glyma.17G055700 Glycine max HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Gohir.A05G125600 Gossypium hirsutum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Gohir.D05G126600 Gossypium hirsutum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Gorai.009G130600 Gossypium raimondii HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Hma1.2p1_0665F.1_g199010 Hydrangea macrophylla HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Lalb_Chr01g0012431 Lupinus albus HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Lalb_Chr25g0279451 Lupinus albus HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
MD17G1208500 Malus domestica HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Manes.04G115100 Manihot esculenta HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Phvul.005G176700 Phaseolus vulgaris HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Psat5g301720 Pisum sativum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Potri.001G171200 Populus trichocarpa HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Potri.003G062800 Populus trichocarpa HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
PGR102G2280 Punica granatum HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
QL07p004909 Quercus lobata HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Sabra03G0036600 Salix brachista HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Sed0025379 Sechium edule HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Thecc.03G000300 Theobroma cacao HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
TPR.G37295 Trifolium pratense HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
TWI12G1114 Tripterygium wilfordii HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
VMungo1080G1169 Vigna mungo HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
GSVIVG01017299001 Vitis vinifera HOM05D001962 ORTHO05D002236 1.6e-07 59.7 67 53.7
Actinidia40465 Actinidia chinensis HOM05D001962 ORTHO05D002236 2.0e-07 59.3 67 53.7
BraA01t03887Z Brassica rapa HOM05D001962 ORTHO05D002236 2.0e-07 59.3 69 52.2
ClCG09G002830 Citrullus lanatus HOM05D001962 ORTHO05D002236 2.0e-07 59.3 67 52.2
Eucgr.F02535 Eucalyptus grandis HOM05D001962 ORTHO05D002236 2.0e-07 59.3 67 52.2
Thhalv10021619m.g Eutrema salsugineum HOM05D001962 ORTHO05D002236 2.0e-07 59.3 69 52.2
Medtr2g103570 Medicago truncatula HOM05D001962 ORTHO05D002236 2.0e-07 59.3 67 52.2
Sp3g14040 Schrenkiella parvula HOM05D001962 ORTHO05D002236 2.0e-07 59.3 69 52.2
CSS0027887 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
CSS0050327 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
MELO3C023413.2 Cucumis melo HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 52.2
Dinv41517 Davidia involucrata HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
MD00G1130100 Malus domestica HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 52.2
Oeu058083.1 Olea europaea HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
Peaxi162Scf00148g00157 Petunia axillaris HOM05D001962 ORTHO05D002236 3.5e-07 58.5 69 50.7
SalBow8G3707 Salvia bowleyana HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
Sed0022045 Sechium edule HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
SMO165G0003 Selaginella moellendorffii HOM05D001962 ORTHO05D002236 3.5e-07 58.5 67 53.7
Actinidia26395 Actinidia chinensis HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Ah.01g020730 Amaranthus hybridus HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
Aqoxy7G02169 Aquilegia oxysepala HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
EL10Ac9g21917 Beta vulgaris HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
BolC6t36595H Brassica oleracea HOM05D001962 ORTHO05D002236 4.5e-07 58.2 74 48.6
Cpa.g.sc75.44 Carica papaya HOM05D001962 ORTHO05D002236 4.5e-07 58.2 63 54.0
CiPaw.02G155900 Carya illinoinensis HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
AUR62011537 Chenopodium quinoa HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
AUR62016356 Chenopodium quinoa HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 53.7
DCAR_017822 Daucus carota HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Migut.G00776 Erythranthe guttata HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Gohir.A10G075200 Gossypium hirsutum HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Gohir.D10G076300 Gossypium hirsutum HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Gorai.011G082100 Gossypium raimondii HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Hma1.2p1_0018F.1_g012500 Hydrangea macrophylla HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Lsat_1_v5_gn_8_32380 Lactuca sativa HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Lalb_Chr14g0373761 Lupinus albus HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Manes.11G054400 Manihot esculenta HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Nn5g27752 Nelumbo nucifera HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Nn8g39437 Nelumbo nucifera HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Psat1g027920 Pisum sativum HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 50.7
Rhsim01G0073100 Rhododendron simsii HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
Sed0003114 Sechium edule HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
SGA_v2.0_scaffold102G29909 Striga asiatica HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
TPR.G21255 Trifolium pratense HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 50.7
TAR636G2771 Trochodendron aralioides HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
vmacro20548 Vaccinium macrocarpon HOM05D001962 ORTHO05D002236 4.5e-07 58.2 67 52.2
ATR0691G074 Amborella trichopoda HOM05D001962 ORTHO05D002236 5.9e-07 57.8 67 53.7
MSTRG.4250 Avicennia marina HOM05D001962 ORTHO05D002236 5.9e-07 57.8 67 50.7
BcaB04g17150 Brassica carinata HOM05D001962 ORTHO05D002236 5.9e-07 57.8 69 50.7
BcaC09g48553 Brassica carinata HOM05D001962 ORTHO05D002236 5.9e-07 57.8 69 50.7
A01p38360 Brassica napus HOM05D001962 ORTHO05D002236 5.9e-07 57.8 69 50.7
C01p48690 Brassica napus HOM05D001962 ORTHO05D002236 5.9e-07 57.8 69 50.7
BolC1t04823H Brassica oleracea HOM05D001962 ORTHO05D002236 5.9e-07 57.8 69 50.7
Lj2A547G20 Lonicera japonica HOM05D001962 ORTHO05D002236 5.9e-07 57.8 67 50.7
Oeu055877.2 Olea europaea HOM05D001962 ORTHO05D002236 5.9e-07 57.8 66 53.0
TAR626G0074 Trochodendron aralioides HOM05D001962 ORTHO05D002236 5.9e-07 57.8 67 50.7
RcHm_v2.0_Chr2g0136041 Rosa chinensis HOM05D001962 ORTHO05D002236 7.7e-07 57.4 67 52.2
Hund06570 Selenicereus undatus HOM05D001962 ORTHO05D002236 7.7e-07 57.4 55 58.2
Cc06_g08610 Coffea canephora HOM05D001962 ORTHO05D002236 1.0e-06 57.0 63 55.6
Dinv36533 Davidia involucrata HOM05D001962 ORTHO05D002236 1.0e-06 57.0 63 55.6
ECA233G2763 Erigeron canadensis HOM05D001962 ORTHO05D002236 1.0e-06 57.0 63 55.6
FAN02G0856 Fragaria x ananassa HOM05D001962 ORTHO05D002236 1.0e-06 57.0 67 52.2
FAN05G2666 Fragaria x ananassa HOM05D001962 ORTHO05D002236 1.0e-06 57.0 67 52.2
FAN09G3276 Fragaria x ananassa HOM05D001962 ORTHO05D002236 1.0e-06 57.0 67 52.2
Manes.06G049000 Manihot esculenta HOM05D001962 ORTHO05D002236 1.0e-06 57.0 67 52.2
unitig_37.g12351 Utricularia gibba HOM05D001962 ORTHO05D002236 1.0e-06 57.0 67 50.7
Aa31LG8G2930 Aethionema arabicum HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 53.7
Cc04_g04210 Coffea canephora HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 50.7
Duzib160G0181 Durio zibethinus HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
Duzib160G0337 Durio zibethinus HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
HanXRQChr13g0388121 Helianthus annuus HOM05D001962 ORTHO05D002236 1.3e-06 56.6 63 54.0
PSO170G1608 Papaver somniferum HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
PSO455G0202 Papaver somniferum HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
PSO541G5707 Papaver somniferum HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
PSO675G4709 Papaver somniferum HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 52.2
THA.LOC104815265 Tarenaya hassleriana HOM05D001962 ORTHO05D002236 1.3e-06 56.6 67 49.3
Ca_02672_v3 Cicer arietinum L. HOM05D001962 ORTHO05D002236 1.7e-06 56.2 67 50.7
Mapoly0038s0030 Marchantia polymorpha HOM05D001962 ORTHO05D002236 1.7e-06 56.2 69 50.7
Actinidia37159 Actinidia chinensis HOM05D001962 ORTHO05D002236 2.3e-06 55.8 55 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3950 Anthoceros agrestis HOM05D001962 ORTHO05D002236 2.3e-06 55.8 63 54.0
CSS0037743 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 2.3e-06 55.8 63 55.6
FAN14G3344 Fragaria x ananassa HOM05D001962 ORTHO05D002236 2.3e-06 55.8 67 50.7
Hund00537 Selenicereus undatus HOM05D001962 ORTHO05D002236 2.3e-06 55.8 67 52.2
SEGI_33352 Sequoiadendron giganteum HOM05D001962 ORTHO05D002236 2.3e-06 55.8 67 50.7
ATR0681G299 Amborella trichopoda HOM05D001962 ORTHO05D002236 2.9e-06 55.5 63 54.0
BcaB06g25680 Brassica carinata HOM05D001962 ORTHO05D002236 2.9e-06 55.5 67 49.3
CDE02G0835 Ceratophyllum demersum HOM05D001962 ORTHO05D002236 2.9e-06 55.5 67 50.7
FvH4_6g30010 Fragaria vesca HOM05D001962 ORTHO05D002236 2.9e-06 55.5 63 54.0
MSTRG.9791 Avicennia marina HOM05D001962 ORTHO05D002236 3.8e-06 55.1 63 52.4
A05p33710 Brassica napus HOM05D001962 ORTHO05D002236 3.8e-06 55.1 67 49.3
A08p02120 Brassica napus HOM05D001962 ORTHO05D002236 3.8e-06 55.1 67 50.7
BraA05t22192Z Brassica rapa HOM05D001962 ORTHO05D002236 3.8e-06 55.1 67 49.3
BraA08t32259Z Brassica rapa HOM05D001962 ORTHO05D002236 3.8e-06 55.1 67 50.7
Lj5A69T40 Lonicera japonica HOM05D001962 ORTHO05D002236 5.0e-06 54.7 67 47.8
Nitab4.5_0015183g0010 Nicotiana tabacum HOM05D001962 ORTHO05D002236 5.0e-06 54.7 63 50.8
Pp3c14_17270 Physcomitrium patens HOM05D001962 ORTHO05D002236 5.0e-06 54.7 63 54.0
Glyma.15G009200 Glycine max HOM05D001962 ORTHO05D002236 6.6e-06 54.3 67 50.7
Lj3g0016324 Lotus japonicus HOM05D001962 ORTHO05D002236 6.6e-06 54.3 67 50.7
SalBow2G0972 Salvia bowleyana HOM05D001962 ORTHO05D002236 6.6e-06 54.3 67 49.3
arahy.Tifrunner.gnm1.ann1.BJ7T6U Arachis hypogaea HOM05D001962 ORTHO05D002236 8.6e-06 53.9 67 49.3
arahy.Tifrunner.gnm1.ann1.FVC51Z Arachis hypogaea HOM05D001962 ORTHO05D002236 8.6e-06 53.9 67 49.3
Lalb_Chr08g0234881 Lupinus albus HOM05D001962 ORTHO05D002236 8.6e-06 53.9 63 47.6
Pp3c10_16090 Physcomitrium patens HOM05D001962 ORTHO05D002236 8.6e-06 53.9 63 52.4
Sc12g0009360 Simmondsia chinensis HOM05D001962 ORTHO05D002236 8.6e-06 53.9 67 49.3
TWI34G1235 Tripterygium wilfordii HOM05D001962 ORTHO05D002236 8.6e-06 53.9 67 44.8


User provided reference genes

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