Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46440 Brassica napus HOM05D001899 ORTHO05D001858 1.9e-173 612.5 314 100.0
BolC2t10696H Brassica oleracea HOM05D001899 ORTHO05D001858 2.5e-157 558.9 291 97.9
A02p29250 Brassica napus HOM05D001899 ORTHO05D001858 1.1e-93 347.4 683 38.2
BcaC03g16770 Brassica carinata HOM05D001899 ORTHO05D001858 3.3e-93 345.9 568 43.8
BraA02t07954Z Brassica rapa HOM05D001899 ORTHO05D001858 6.2e-92 341.7 683 37.6
BcaB07g30441 Brassica carinata HOM05D001899 ORTHO05D001858 9.5e-85 317.8 692 35.8
BcaC03g16765 Brassica carinata HOM05D001899 ORTHO05D001858 8.6e-78 294.7 674 34.9
BolC2t10694H Brassica oleracea HOM05D001899 ORTHO05D001858 1.9e-77 293.5 685 34.5
C02p46420 Brassica napus HOM05D001899 ORTHO05D001858 1.1e-75 287.7 685 33.9
BolC2t10693H Brassica oleracea HOM05D001899 ORTHO05D001858 2.9e-57 226.5 257 54.9
BcaC03g16766 Brassica carinata HOM05D001899 ORTHO05D001858 1.1e-56 224.6 257 54.5
BcaC03g16767 Brassica carinata HOM05D001899 ORTHO05D001858 1.3e-44 184.5 116 76.7
BraA02t08031Z Brassica rapa HOM05D001899 ORTHO05D001858 7.9e-39 165.2 93 89.2
BcaC09g51287 Brassica carinata HOM05D001899 ORTHO05D001858 1.8e-38 164.1 176 57.4
BraA03t11347Z Brassica rapa HOM05D001899 ORTHO05D014741 6.7e-38 162.2 93 88.2
C01p14770 Brassica napus HOM05D001899 ORTHO05D001858 8.7e-38 161.8 93 88.2
C08p03920 Brassica napus HOM05D001899 ORTHO05D001858 8.7e-38 161.8 93 88.2
C08p23100 Brassica napus HOM05D001899 ORTHO05D001858 8.7e-38 161.8 93 87.1
C06p15720 Brassica napus HOM05D001899 ORTHO05D001858 9.6e-37 158.3 93 87.1
A02p21350 Brassica napus HOM05D001899 ORTHO05D001858 1.3e-36 157.9 120 70.0
C08p27130 Brassica napus HOM05D001899 ORTHO05D001858 1.3e-36 157.9 120 70.0
BcaNung05132 Brassica carinata HOM05D001899 ORTHO05D001858 3.1e-35 153.3 120 69.2
BraA06t27532Z Brassica rapa HOM05D001899 ORTHO05D001858 3.9e-30 136.3 120 60.0
CARHR176520 Cardamine hirsuta HOM05D001899 ORTHO05D001858 6.7e-30 135.6 120 61.7
A06p46580 Brassica napus HOM05D001899 ORTHO05D001858 1.9e-29 134.0 156 50.6
BcaC06g34430 Brassica carinata HOM05D001899 ORTHO05D001858 6.3e-28 129.0 154 49.4
C07p28570 Brassica napus HOM05D001899 ORTHO05D001858 6.3e-28 129.0 154 49.4
BcaC06g31547 Brassica carinata HOM05D001899 ORTHO05D001858 1.8e-27 127.5 258 36.4
BolC7t43395H Brassica oleracea HOM05D001899 ORTHO05D001858 1.8e-27 127.5 674 24.5
Carub.0008s0252 Capsella rubella HOM05D001899 ORTHO05D001858 1.7e-25 120.9 165 47.3
BcaC06g31548 Brassica carinata HOM05D001899 ORTHO05D001858 1.6e-23 114.4 541 26.4
AT5G45500 Arabidopsis thaliana HOM05D001899 ORTHO05D001858 4.8e-20 102.8 161 41.6
AL8G13220 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 6.3e-20 102.4 136 46.3
THA.LOC104798669 Tarenaya hassleriana HOM05D001899 ORTHO05D001858 4.1e-19 99.8 163 38.7
THA.LOC104807149 Tarenaya hassleriana HOM05D001899 ORTHO05D001858 4.1e-19 99.8 163 38.7
CARHR176530 Cardamine hirsuta HOM05D001899 ORTHO05D001858 1.7e-17 94.4 126 46.8
Thhalv10000788m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 5.0e-17 92.8 142 43.0
AL8G13350 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 1.0e-14 85.1 66 62.1
Carub.0008s0261 Capsella rubella HOM05D001899 ORTHO05D001858 5.7e-13 79.3 181 39.2
BcaNung04015 Brassica carinata HOM05D001899 ORTHO05D001858 7.4e-13 79.0 93 47.3
Sabra11G0027700 Salix brachista HOM05D001899 ORTHO05D001858 1.1e-11 75.1 135 36.3
CARHR176600 Cardamine hirsuta HOM05D001899 ORTHO05D001858 1.8e-11 74.3 67 58.2
BolC6t35216H Brassica oleracea HOM05D001899 ORTHO05D042830 2.4e-11 73.9 96 44.8
A06p20890 Brassica napus HOM05D001899 ORTHO05D001858 3.1e-11 73.6 35 97.1
COL.COLO4_16866 Corchorus olitorius HOM05D001899 ORTHO05D001858 5.9e-10 69.3 176 33.5
Hma1.2p1_1515F.1_g288230 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 5.9e-10 69.3 194 31.4
Atru.chr2.1041 Acer truncatum HOM05D001899 ORTHO05D001858 1.3e-09 68.2 120 40.0
QL03p012061 Quercus lobata HOM05D001899 ORTHO05D001858 1.3e-09 68.2 156 34.0
Potri.011G040700 Populus trichocarpa HOM05D001899 ORTHO05D001858 1.7e-09 67.8 135 35.6
Aqoxy1G04132 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 2.2e-09 67.4 162 34.0
AL7G35010 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 2.2e-09 67.4 71 52.1
Thhalv10024687m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 2.2e-09 67.4 155 33.5
MD12G1056400 Malus domestica HOM05D001899 ORTHO05D001858 2.2e-09 67.4 154 33.8
DCAR_009113 Daucus carota HOM05D001899 ORTHO05D001858 1.1e-08 65.1 169 32.0
Carub.0008s0250 Capsella rubella HOM05D001899 ORTHO05D001858 1.5e-08 64.7 66 48.5
DCAR_013526 Daucus carota HOM05D001899 ORTHO05D001858 1.5e-08 64.7 75 48.0
QL03p006371 Quercus lobata HOM05D001899 ORTHO05D001858 1.5e-08 64.7 135 34.8
QL03p011987 Quercus lobata HOM05D001899 ORTHO05D001858 2.5e-08 63.9 157 32.5
TWI38G0922 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 2.5e-08 63.9 64 53.1
CSS0020860 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.2e-08 63.5 179 28.5
CSS0019781 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.2e-08 63.2 179 29.1
CSS0043072 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.2e-08 63.2 179 29.1
Atru.chr2.1017 Acer truncatum HOM05D001899 ORTHO05D001858 5.5e-08 62.8 150 36.0
Lj2P373T19 Lonicera japonica HOM05D001899 ORTHO05D001858 5.5e-08 62.8 176 31.2
CSS0033864 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 9.4e-08 62.0 176 29.0
Hma1.2p1_0005F.1_g004450 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 1.2e-07 61.6 209 29.2
Aa31LG9G7500 Aethionema arabicum HOM05D001899 ORTHO05D001858 2.1e-07 60.8 64 48.4
CSS0044759 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 2.1e-07 60.8 148 31.1
RcHm_v2.0_Chr3g0479511 Rosa chinensis HOM05D001899 ORTHO05D001858 2.1e-07 60.8 177 32.2
Sp2g10420 Schrenkiella parvula HOM05D001899 ORTHO05D001858 2.1e-07 60.8 124 37.9
FAN05G3856 Fragaria x ananassa HOM05D001899 ORTHO05D001858 2.7e-07 60.5 159 33.3
Aqoxy1G04207 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 3.6e-07 60.1 164 32.9
CSS0027738 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.6e-07 60.1 150 30.7
QL05p080564 Quercus lobata HOM05D001899 ORTHO05D001858 3.6e-07 60.1 162 32.1
BraA06t25633Z Brassica rapa HOM05D002292 ORTHO05D014741 4.7e-07 59.7 112 39.3
CSS0017902 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.7e-07 59.7 124 32.3
MSTRG.15943 Avicennia marina HOM05D001899 ORTHO05D001858 6.1e-07 59.3 188 29.8
A06p46560 Brassica napus HOM05D001899 ORTHO05D001858 6.1e-07 59.3 66 47.0
Cpa.g.sc74.94 Carica papaya HOM05D001899 ORTHO05D001858 6.1e-07 59.3 94 38.3
Actinidia25742 Actinidia chinensis HOM05D001899 ORTHO05D001858 8.0e-07 58.9 168 29.2
BraA06t27530Z Brassica rapa HOM05D001899 ORTHO05D001858 8.0e-07 58.9 66 47.0
CSS0023008 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 8.0e-07 58.9 150 30.7
CAN.G641.63 Capsicum annuum HOM05D001899 ORTHO05D001858 8.0e-07 58.9 123 35.8
RcHm_v2.0_Chr2g0151861 Rosa chinensis HOM05D001899 ORTHO05D001858 8.0e-07 58.9 123 35.8
Actinidia05558 Actinidia chinensis HOM05D001899 ORTHO05D001858 1.0e-06 58.5 169 31.4
FvH4_6g22160 Fragaria vesca HOM05D001899 ORTHO05D001858 1.0e-06 58.5 154 32.5
Lj2P372T15 Lonicera japonica HOM05D001899 ORTHO05D001858 1.0e-06 58.5 155 29.7
CSS0001314 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.4e-06 58.2 146 31.5
CSS0033544 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.4e-06 58.2 150 30.7
CARHR176500 Cardamine hirsuta HOM05D001899 ORTHO05D001858 1.4e-06 58.2 133 33.8
FAN14G0941 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.4e-06 58.2 161 29.2
QL10p057408 Quercus lobata HOM05D001899 ORTHO05D001858 1.4e-06 58.2 144 33.3
CSS0040111 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.8e-06 57.8 142 31.7
FAN02G1023 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.8e-06 57.8 179 30.7
Hma1.2p1_0565F.1_g179700 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 1.8e-06 57.8 121 33.9
AL8G13180 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 2.3e-06 57.4 63 46.0
CSS0021841 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 2.3e-06 57.4 122 36.9
CSS0023269 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 2.3e-06 57.4 124 33.9
Thhalv10000749m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 2.3e-06 57.4 123 35.0
Lsat_1_v5_gn_1_124180 Lactuca sativa HOM05D001899 ORTHO05D001858 2.3e-06 57.4 172 30.2
Atru.chr2.1036 Acer truncatum HOM05D001899 ORTHO05D001858 3.0e-06 57.0 61 52.5
Haze_06607 Corylus avellana HOM05D001899 ORTHO05D001858 3.0e-06 57.0 102 38.2
Lju124C32T3 Lonicera japonica HOM05D001899 ORTHO05D001858 3.0e-06 57.0 64 50.0
PGR044G0582 Punica granatum HOM05D001899 ORTHO05D001858 3.0e-06 57.0 119 33.6
CAN.G641.68 Capsicum annuum HOM05D001899 ORTHO05D001858 4.0e-06 56.6 123 36.6
Duzib205G1384 Durio zibethinus HOM05D001899 ORTHO05D001858 4.0e-06 56.6 62 46.8
BcaC06g34428 Brassica carinata HOM05D001899 ORTHO05D001858 5.2e-06 56.2 101 36.6
C07p28610 Brassica napus HOM05D001899 ORTHO05D001858 5.2e-06 56.2 101 36.6
BolC7t43399H Brassica oleracea HOM05D001899 ORTHO05D001858 5.2e-06 56.2 101 36.6
CSS0038257 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 5.2e-06 56.2 133 29.3
Nn1g03842 Nelumbo nucifera HOM05D001899 ORTHO05D001858 5.2e-06 56.2 63 52.4
CSS0016967 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 6.7e-06 55.8 150 30.7
CSS0033155 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 6.7e-06 55.8 123 35.0
Cfa000321 Carpinus fangiana HOM05D001899 ORTHO05D001858 6.7e-06 55.8 165 29.1
ECA248G0422 Erigeron canadensis HOM05D001899 ORTHO05D001858 6.7e-06 55.8 131 32.8
PGR031G3911 Punica granatum HOM05D001899 ORTHO05D001858 6.7e-06 55.8 154 31.8
CAN.G641.77 Capsicum annuum HOM05D001899 ORTHO05D001858 8.8e-06 55.5 123 34.1
Os01g0799000 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 8.8e-06 55.5 64 50.0
Prupe.7G078600 Prunus persica HOM05D001899 ORTHO05D001858 8.8e-06 55.5 180 31.1


User provided reference genes

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