Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-55 219.2 110 100.0
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 4.1e-51 204.5 102 100.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 4.1e-51 204.5 102 100.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 9.5e-48 193.4 102 95.1
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 9.5e-48 193.4 102 95.1
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-47 191.4 102 94.1
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.3e-33 145.6 80 93.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 3.3e-32 141.7 80 90.0
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 3.1e-30 135.2 80 83.8
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.8e-30 134.0 80 85.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 8.9e-30 133.7 80 86.2
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.0e-29 132.5 80 83.8
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.6e-29 132.1 80 83.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.4e-29 131.7 82 84.1
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 7.5e-29 130.6 79 83.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 7.5e-29 130.6 79 83.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.7e-28 129.4 79 82.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.7e-28 129.4 79 81.0
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.7e-28 129.4 79 82.3
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-28 129.0 80 82.5
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-28 129.0 80 82.5
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-28 129.0 80 82.5
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 2.2e-28 129.0 80 82.5
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 2.2e-28 129.0 79 83.5
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.9e-28 128.6 77 83.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 2.9e-28 128.6 77 83.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 3.7e-28 128.3 79 82.3
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.9e-28 127.9 80 81.2
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 6.4e-28 127.5 81 77.8
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 6.4e-28 127.5 79 79.7
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 6.4e-28 127.5 77 81.8
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.4e-27 126.3 81 77.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-27 126.3 80 81.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.9e-27 125.9 80 77.5
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.9e-27 125.9 79 78.5
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-27 125.6 81 77.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-27 125.6 81 77.8
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.4e-27 125.6 80 76.2
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.4e-27 125.6 77 83.1
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.4e-27 125.6 79 79.7
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.4e-27 125.6 79 81.0
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 5.4e-27 124.4 77 80.5
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.4e-27 124.4 77 80.5
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.4e-27 124.4 77 80.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 7.1e-27 124.0 74 82.4
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.6e-26 122.9 76 77.6
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.6e-26 122.9 79 77.2
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.6e-26 122.9 74 82.4
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.1e-26 122.5 79 75.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.1e-26 122.5 75 78.7
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.7e-26 122.1 79 78.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.7e-26 122.1 75 81.3
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 2.7e-26 122.1 76 78.9
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 3.5e-26 121.7 77 79.2
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 3.5e-26 121.7 76 78.9
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 4.6e-26 121.3 74 79.7
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 4.6e-26 121.3 77 79.2
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 6.0e-26 120.9 75 80.0
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 6.0e-26 120.9 79 77.2
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 6.0e-26 120.9 75 80.0
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 7.8e-26 120.6 79 75.9
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.0e-25 120.2 75 80.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.0e-25 120.2 74 79.7
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.7e-25 119.4 76 77.6
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 3.9e-25 118.2 79 73.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 3.9e-25 118.2 75 78.7
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 3.9e-25 118.2 79 74.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.1e-25 117.9 77 76.6
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 5.1e-25 117.9 76 75.0
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 6.6e-25 117.5 75 77.3
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.6e-25 117.5 76 75.0
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 6.6e-25 117.5 76 76.3
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 6.6e-25 117.5 76 76.3
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 8.6e-25 117.1 77 80.5
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 8.6e-25 117.1 75 80.0
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.1e-24 116.7 76 77.6
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.1e-24 116.7 76 76.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.1e-24 116.7 75 80.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.5e-24 116.3 75 78.7
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.5e-24 116.3 75 78.7
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.5e-24 116.3 75 78.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.5e-24 116.3 76 75.0
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.9e-24 115.9 79 73.4
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.9e-24 115.9 75 78.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.9e-24 115.9 75 78.7
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.5e-24 115.5 75 76.0
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.5e-24 115.5 77 76.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.3e-24 115.2 76 76.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.3e-24 115.2 79 73.4
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 4.3e-24 114.8 79 73.4
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 4.3e-24 114.8 76 76.3
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 7.3e-24 114.0 80 72.5
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.6e-23 112.8 76 73.7
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.1e-23 112.5 76 73.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 3.6e-23 111.7 79 69.6
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 4.7e-23 111.3 75 72.0
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.2e-23 110.9 76 72.4
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.1e-23 110.5 73 74.0
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.1e-22 110.2 73 74.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.4e-22 109.8 76 71.1
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.0e-22 108.2 75 69.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.2e-22 107.8 75 68.0
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 6.8e-22 107.5 81 67.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.2e-21 106.7 75 69.3
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.5e-21 106.3 75 69.3
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.5e-21 106.3 75 68.0
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.0e-21 105.9 77 67.5
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.0e-21 105.9 75 70.7
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.9e-20 102.1 101 58.4
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 3.8e-20 101.7 77 67.5
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 8.4e-20 100.5 81 72.8
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 2.4e-19 99.0 80 63.8
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.2e-18 96.7 75 61.3
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.2e-18 96.7 75 64.0
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.0e-17 93.6 75 61.3
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-17 92.4 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.1e-17 91.3 73 63.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.2e-10 70.1 40 85.0
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.9e-09 65.1 38 86.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 5.6e-08 61.2 44 65.9
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.3e-08 60.8 40 70.0
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.6e-07 59.7 40 70.0
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 8.1e-07 57.4 69 42.0


User provided reference genes

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