Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.1e-58 228.8 114 100.0
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 4.7e-26 121.3 62 96.8
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 4.7e-26 121.3 62 96.8
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 4.7e-26 121.3 62 96.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-25 120.2 62 95.2
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-25 119.8 62 95.2
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.4e-25 119.8 62 93.5
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 3.1e-25 118.6 62 95.2
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-25 118.2 62 95.2
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-25 118.2 62 95.2
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 5.2e-25 117.9 62 93.5
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 5.2e-25 117.9 62 93.5
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 6.9e-25 117.5 61 93.4
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 8.9e-25 117.1 62 91.9
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 8.9e-25 117.1 62 91.9
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.5e-24 116.3 62 93.5
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.5e-24 116.3 62 93.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.4e-24 115.2 62 88.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 4.4e-24 114.8 62 88.7
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 7.6e-24 114.0 62 91.9
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 9.9e-24 113.6 62 88.7
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 8.4e-23 110.5 61 85.2
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.7e-21 105.5 62 83.9
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.7e-21 105.5 62 83.9
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.7e-21 105.5 62 83.9
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.0e-20 103.6 62 82.3
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-20 102.8 62 80.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-20 102.8 62 80.6
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-20 102.8 62 80.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.3e-20 102.4 62 80.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.3e-20 102.4 61 78.7
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 3.9e-20 101.7 62 80.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 3.9e-20 101.7 62 80.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.1e-20 101.3 64 76.6
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-19 100.1 62 79.0
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-19 100.1 62 79.0
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.9e-19 99.4 61 80.3
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-19 99.4 62 79.0
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-19 99.4 62 79.0
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.9e-19 99.4 62 79.0
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.9e-19 99.4 61 77.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.5e-19 99.0 62 77.4
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 3.3e-19 98.6 62 79.0
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.3e-19 98.6 62 77.4
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 3.3e-19 98.6 62 77.4
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 4.3e-19 98.2 62 75.8
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 7.3e-19 97.4 62 77.4
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.6e-19 97.1 62 75.8
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.6e-19 97.1 62 77.4
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 9.6e-19 97.1 68 72.1
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 9.6e-19 97.1 62 75.8
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.3e-18 96.7 59 76.3
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.3e-18 96.7 74 66.2
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.3e-18 96.7 62 75.8
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.6e-18 96.3 62 75.8
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 2.1e-18 95.9 61 75.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 2.8e-18 95.5 62 74.2
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.8e-18 95.5 62 75.8
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.8e-18 95.5 62 74.2
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 2.8e-18 95.5 59 76.3
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 3.6e-18 95.1 62 75.8
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 3.6e-18 95.1 59 79.7
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 4.8e-18 94.7 62 74.2
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 4.8e-18 94.7 62 72.6
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 4.8e-18 94.7 59 78.0
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 6.2e-18 94.4 62 74.2
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 8.1e-18 94.0 62 71.0
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.1e-17 93.6 62 72.6
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.1e-17 93.6 62 71.0
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.1e-17 93.6 62 72.6
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.1e-17 93.6 62 72.6
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.4e-17 93.2 62 72.6
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.4e-17 92.4 62 74.2
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.1e-17 92.0 61 73.8
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 3.1e-17 92.0 61 72.1
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 3.1e-17 92.0 61 68.9
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.0e-17 91.7 62 74.2
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 5.3e-17 91.3 62 74.2
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.9e-17 90.9 62 74.2
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 9.0e-17 90.5 58 74.1
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 9.0e-17 90.5 62 72.6
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 9.0e-17 90.5 61 70.5
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 9.0e-17 90.5 61 70.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.2e-16 90.1 62 69.4
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.5e-16 89.7 62 69.4
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-16 89.7 62 74.2
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-16 89.7 62 74.2
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-16 89.7 62 74.2
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.5e-16 89.7 61 68.9
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-16 89.4 62 74.2
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-16 89.4 62 74.2
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 2.0e-16 89.4 61 67.2
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.0e-16 89.4 61 67.2
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.6e-16 89.0 61 72.1
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.6e-16 89.0 62 67.7
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 3.4e-16 88.6 61 70.5
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 3.4e-16 88.6 61 68.9
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.5e-16 88.2 59 67.8
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 9.9e-16 87.0 62 69.4
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.3e-15 86.7 62 67.7
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 2.2e-15 85.9 62 66.1
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 2.9e-15 85.5 79 62.0
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.9e-15 85.5 62 67.7
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 3.8e-15 85.1 91 57.1
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.8e-15 85.1 61 68.9
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.8e-15 85.1 69 58.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.8e-15 85.1 69 58.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.8e-15 85.1 69 58.0
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.8e-15 85.1 69 58.0
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.8e-15 85.1 61 67.2
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 8.4e-15 84.0 62 64.5
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.4e-14 83.2 62 67.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.4e-14 83.2 58 69.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.4e-14 83.2 70 60.0
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.9e-14 82.8 69 55.1
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.9e-14 82.8 69 55.1
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.1e-13 79.3 57 70.2
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.1e-13 79.3 57 70.2
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.8e-12 76.3 59 62.7
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.6e-10 69.7 62 59.7
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.8e-10 68.9 48 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 9.0e-09 63.9 59 52.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 9.0e-09 63.9 59 52.5
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 2.6e-08 62.4 120 35.8
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.6e-08 60.8 66 59.1
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.6e-08 60.8 66 59.1
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.9e-07 58.9 32 78.1
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 3.2e-06 55.5 32 68.8


User provided reference genes

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