Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-96 355.9 236 100.0
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.8e-89 332.4 235 93.2
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 6.5e-78 294.7 198 82.3
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-67 260.4 198 76.8
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 5.1e-67 258.5 198 76.3
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 6.7e-67 258.1 198 76.3
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.7e-65 253.4 191 78.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.7e-65 253.4 191 78.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.9e-61 240.0 200 71.0
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.9e-61 240.0 200 71.0
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.9e-61 240.0 200 71.0
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.5e-55 219.2 206 66.5
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.7e-54 216.9 198 66.2
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 5.2e-51 205.3 155 73.5
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 5.2e-51 205.3 155 73.5
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 1.8e-43 180.3 100 96.0
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 3.0e-43 179.5 101 95.0
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.0e-35 152.5 188 55.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 5.7e-34 148.7 196 54.1
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.3e-33 147.5 203 54.2
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.3e-33 147.5 203 54.2
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.3e-33 147.5 203 54.2
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.2e-33 146.7 183 57.9
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 4.9e-33 145.6 215 51.6
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 8.3e-33 144.8 153 59.5
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-32 144.1 172 57.6
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 2.4e-32 143.3 198 53.5
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 5.4e-32 142.1 187 52.4
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-31 141.0 205 52.2
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-31 140.6 180 54.4
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.5e-31 139.4 191 51.8
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.0e-30 137.9 209 49.8
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.9e-30 136.0 174 53.4
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 6.6e-30 135.2 195 51.3
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.5e-29 134.0 209 49.3
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 3.3e-29 132.9 197 51.8
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 4.3e-29 132.5 177 53.7
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 7.3e-29 131.7 193 49.2
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.2e-28 131.0 198 48.5
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.2e-28 131.0 202 48.0
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 2.1e-28 130.2 195 48.2
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 8.0e-28 128.3 176 51.7
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 5.2e-27 125.6 142 56.3
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 5.2e-27 125.6 197 47.7
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-26 123.6 203 50.2
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.6e-26 123.2 212 45.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.4e-26 122.9 167 50.3
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 5.8e-26 122.1 141 55.3
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 2.2e-25 120.2 153 53.6
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 3.7e-25 119.4 133 54.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 4.9e-25 119.0 192 45.3
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 4.9e-25 119.0 147 51.0
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 6.4e-25 118.6 146 52.1
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.1e-24 117.9 161 46.0
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.1e-24 117.9 141 52.5
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 1.1e-24 117.9 159 50.3
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 1.1e-24 117.9 153 51.0
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 3.2e-24 116.3 202 44.6
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 3.2e-24 116.3 144 50.0
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.2e-24 116.3 133 54.1
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 3.2e-24 116.3 141 53.9
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 5.4e-24 115.5 169 47.9
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 5.4e-24 115.5 141 52.5
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 7.0e-24 115.2 207 43.5
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.2e-23 114.4 137 51.1
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.2e-23 114.4 172 45.3
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.2e-23 114.4 186 44.6
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.2e-23 114.4 197 42.1
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.2e-23 114.4 202 44.6
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.6e-23 114.0 139 52.5
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.6e-23 114.0 138 52.2
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.6e-23 114.0 138 52.2
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.6e-23 114.0 146 52.1
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 2.0e-23 113.6 138 52.9
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 2.0e-23 113.6 133 55.6
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 2.7e-23 113.2 125 52.0
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 4.6e-23 112.5 138 50.7
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 4.6e-23 112.5 201 44.3
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.8e-23 111.7 144 50.7
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 7.8e-23 111.7 169 48.5
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.0e-22 111.3 143 48.3
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 1.7e-22 110.5 138 51.4
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 3.0e-22 109.8 137 50.4
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.0e-22 109.8 166 47.0
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 8.6e-22 108.2 152 46.1
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 8.6e-22 108.2 129 51.9
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.1e-21 107.8 196 41.3
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 1.5e-21 107.5 129 53.5
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.5e-21 107.5 143 48.3
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.9e-21 107.1 204 43.6
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 3.3e-21 106.3 200 42.0
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 3.3e-21 106.3 216 41.2
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 5.6e-21 105.5 177 44.6
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 5.6e-21 105.5 138 51.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 9.5e-21 104.8 137 48.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 1.2e-20 104.4 173 42.8
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 2.1e-20 103.6 134 50.7
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 4.7e-20 102.4 203 41.4
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 6.2e-20 102.1 132 50.0
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 6.2e-20 102.1 166 42.2
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.2e-20 102.1 166 42.2
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.2e-20 102.1 194 43.3
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.1e-19 101.3 166 42.2
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.4e-19 100.9 210 41.4
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.3e-19 100.1 166 41.6
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 2.3e-19 100.1 155 45.8
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.1e-19 99.8 176 41.5
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.1e-19 99.8 162 42.0
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 3.1e-19 99.8 203 40.9
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.0e-19 99.4 171 43.9
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 4.0e-19 99.4 166 43.4
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 5.2e-19 99.0 141 44.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.2e-18 97.8 196 40.3
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 1.2e-18 97.8 202 41.6
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 3.4e-18 96.3 208 39.9
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 5.8e-18 95.5 133 45.1
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 1.3e-17 94.4 133 48.1
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 2.9e-17 93.2 197 39.6
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 6.4e-17 92.0 133 48.9
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.4e-17 92.0 163 40.5
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 8.3e-17 91.7 133 46.6
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 1.9e-16 90.5 179 39.7
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 3.2e-16 89.7 151 44.4
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.5e-15 86.3 196 38.8
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 4.6e-15 85.9 133 45.1
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.3e-14 84.3 133 45.9
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 5.1e-14 82.4 193 37.3
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.5e-13 78.2 139 41.0
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-12 77.8 103 47.6
CARHR178330 Cardamine hirsuta HOM05D027155 ORTHO05D023626 1.8e-11 73.9 70 67.1
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 5.2e-11 72.4 129 41.9
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-10 71.2 198 35.4
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.9e-09 66.6 132 41.7
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 3.7e-09 66.2 105 41.9
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.9e-08 63.9 135 35.6
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.2e-07 61.2 141 36.9
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.2e-07 61.2 160 32.5


User provided reference genes

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