Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p43370 Brassica napus HOM05D020815 ORTHO05D040516 3.2e-78 295.0 154 100.0
BolC4t26197H Brassica oleracea HOM05D000380 ORTHO05D040516 5.2e-36 154.8 85 95.3
BcaC03g15174 Brassica carinata HOM05D000380 ORTHO05D000561 3.9e-15 85.5 45 93.3
A02p16440 Brassica napus HOM05D000380 ORTHO05D000561 3.9e-15 85.5 45 93.3
C02p27490 Brassica napus HOM05D000380 ORTHO05D000561 3.9e-15 85.5 45 93.3
BolC2t08808H Brassica oleracea HOM05D000380 ORTHO05D000561 3.9e-15 85.5 45 93.3
C04p46130 Brassica napus HOM05D020815 ORTHO05D103805 8.7e-15 84.3 42 97.6
BraA02t06703Z Brassica rapa HOM05D000380 ORTHO05D000561 1.5e-14 83.6 45 91.1
BcaB05g24545 Brassica carinata HOM05D000380 ORTHO05D000561 1.7e-10 70.1 49 75.5
TPR.G29548 Trifolium pratense HOM05D000380 ORTHO05D000561 2.4e-09 66.2 71 57.7
Medtr8g063790 Medicago truncatula HOM05D000380 ORTHO05D000561 4.2e-09 65.5 73 54.8
Glyma.08G288600 Glycine max HOM05D000380 ORTHO05D000561 7.1e-09 64.7 59 61.0
Psat4g125000 Pisum sativum HOM05D000380 ORTHO05D000561 7.1e-09 64.7 71 56.3
Ca_22747_v3 Cicer arietinum L. HOM05D000380 ORTHO05D000561 2.1e-08 63.2 75 53.3
Thecc.02G245900 Theobroma cacao HOM05D000380 ORTHO05D000561 2.1e-08 63.2 59 61.0
VMungo0251G1735 Vigna mungo HOM05D000380 ORTHO05D000561 2.1e-08 63.2 77 53.2
Carub.0001s2336 Capsella rubella HOM05D000380 ORTHO05D000561 6.0e-08 61.6 95 49.5
Glyma.18G136200 Glycine max HOM05D000380 ORTHO05D000561 6.0e-08 61.6 79 50.6
Gohir.A03G140900 Gossypium hirsutum HOM05D000380 ORTHO05D000561 6.0e-08 61.6 59 61.0
Gorai.005G183800 Gossypium raimondii HOM05D000380 ORTHO05D000561 6.0e-08 61.6 59 61.0
AL1G37620 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 7.9e-08 61.2 95 48.4
AT1G23870 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 7.9e-08 61.2 95 49.5
BcaB03g11957 Brassica carinata HOM05D000380 ORTHO05D000561 7.9e-08 61.2 57 59.6
BcaB07g32362 Brassica carinata HOM05D000380 ORTHO05D000561 7.9e-08 61.2 60 56.7
A08p27980 Brassica napus HOM05D000380 ORTHO05D000561 7.9e-08 61.2 56 60.7
BraA08t34729Z Brassica rapa HOM05D000380 ORTHO05D000561 7.9e-08 61.2 56 60.7
arahy.Tifrunner.gnm1.ann1.AKPI0I Arachis hypogaea HOM05D000380 ORTHO05D000561 1.3e-07 60.5 74 50.0
BcaC07g39219 Brassica carinata HOM05D000380 ORTHO05D000561 1.3e-07 60.5 56 60.7
C08p22140 Brassica napus HOM05D000380 ORTHO05D000561 1.3e-07 60.5 56 60.7
BolC8t49860H Brassica oleracea HOM05D000380 ORTHO05D000561 1.3e-07 60.5 56 60.7
Eucgr.B03950 Eucalyptus grandis HOM05D000380 ORTHO05D000561 1.3e-07 60.5 61 59.0
AL2G29590 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 1.8e-07 60.1 54 64.8
arahy.Tifrunner.gnm1.ann1.CM68RF Arachis hypogaea HOM05D000380 ORTHO05D000561 1.8e-07 60.1 79 50.6
Duzib268G1813 Durio zibethinus HOM05D000380 ORTHO05D000561 1.8e-07 60.1 58 62.1
AL2G16520 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 2.3e-07 59.7 60 56.7
Carub.0002s1697 Capsella rubella HOM05D000380 ORTHO05D000561 2.3e-07 59.7 57 63.2
Duzib251G0542 Durio zibethinus HOM05D000380 ORTHO05D000561 2.3e-07 59.7 58 62.1
Thhalv10018114m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 2.3e-07 59.7 78 55.1
Lj4g0012447 Lotus japonicus HOM05D000380 ORTHO05D000561 2.3e-07 59.7 72 51.4
Sp1g21220 Schrenkiella parvula HOM05D000380 ORTHO05D000561 2.3e-07 59.7 95 47.4
Atru.chr11.1999 Acer truncatum HOM05D000380 ORTHO05D000561 3.0e-07 59.3 61 57.4
AT1G60140 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 3.0e-07 59.3 58 60.3
CARHR024270 Cardamine hirsuta HOM05D000380 ORTHO05D000561 3.0e-07 59.3 95 47.4
COL.COLO4_19520 Corchorus olitorius HOM05D000380 ORTHO05D000561 3.9e-07 58.9 54 63.0
Thhalv10006773m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 5.1e-07 58.5 93 47.3
Phvul.003G053000 Phaseolus vulgaris HOM05D000380 ORTHO05D000561 5.1e-07 58.5 77 50.6
Glyma.02G033500 Glycine max HOM05D000380 ORTHO05D000561 6.7e-07 58.2 55 58.2
QL03p061844 Quercus lobata HOM05D000380 ORTHO05D000561 6.7e-07 58.2 54 63.0
Rhsim12G0047800 Rhododendron simsii HOM05D000380 ORTHO05D000561 6.7e-07 58.2 53 60.4
arahy.Tifrunner.gnm1.ann1.IE8W25 Arachis hypogaea HOM05D000380 ORTHO05D000561 8.7e-07 57.8 58 58.6
CSS0047352 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 8.7e-07 57.8 59 55.9
Carub.0002s0511 Capsella rubella HOM05D000380 ORTHO05D000561 8.7e-07 57.8 58 60.3
PGSC0003DMG400004114 Solanum tuberosum HOM05D000380 ORTHO05D000561 8.7e-07 57.8 51 60.8
CSS0017242 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 1.1e-06 57.4 54 59.3
Ciclev10030691m.g Citrus clementina HOM05D000380 ORTHO05D000561 1.1e-06 57.4 63 57.1
VMungo1215G1617 Vigna mungo HOM05D000380 ORTHO05D000561 1.1e-06 57.4 55 58.2
CSS0032695 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 1.5e-06 57.0 74 51.4
Migut.E00153 Erythranthe guttata HOM05D000380 ORTHO05D000561 1.5e-06 57.0 56 58.9
Glyma.01G031900 Glycine max HOM05D000380 ORTHO05D000561 1.5e-06 57.0 55 56.4
Phvul.002G072400 Phaseolus vulgaris HOM05D000380 ORTHO05D000561 1.5e-06 57.0 55 56.4
Aa31LG7G7730 Aethionema arabicum HOM05D000380 ORTHO05D000561 1.9e-06 56.6 96 45.8
Nn8g40273 Nelumbo nucifera HOM05D000380 ORTHO05D000561 1.9e-06 56.6 65 50.8
RcHm_v2.0_Chr4g0444141 Rosa chinensis HOM05D000380 ORTHO05D000561 1.9e-06 56.6 58 58.6
ClCG05G025190 Citrullus lanatus HOM05D000380 ORTHO05D000561 2.5e-06 56.2 59 55.9
FAN22G0429 Fragaria x ananassa HOM05D000380 ORTHO05D000561 2.5e-06 56.2 55 58.2
Lalb_Chr16g0392441 Lupinus albus HOM05D000380 ORTHO05D000561 2.5e-06 56.2 77 46.8
Manes.05G087900 Manihot esculenta HOM05D000380 ORTHO05D000561 2.5e-06 56.2 59 55.9
AT1G70290 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 3.3e-06 55.8 112 44.6
BcaB03g11958 Brassica carinata HOM05D000380 ORTHO05D000561 3.3e-06 55.8 102 39.2
BcaB04g20251 Brassica carinata HOM05D000380 ORTHO05D000561 3.3e-06 55.8 58 56.9
BcaC02g10681 Brassica carinata HOM05D000380 ORTHO05D000561 3.3e-06 55.8 56 58.9
BolC4t24143H Brassica oleracea HOM05D000380 ORTHO05D000561 3.3e-06 55.8 56 58.9
BcaC09g49430 Brassica carinata HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 56.4
A01p29090 Brassica napus HOM05D000380 ORTHO05D000561 4.3e-06 55.5 57 56.1
C01p36820 Brassica napus HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 56.4
BolC1t03642H Brassica oleracea HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 56.4
BraA01t02986Z Brassica rapa HOM05D000380 ORTHO05D000561 4.3e-06 55.5 57 56.1
CARHR052780 Cardamine hirsuta HOM05D000380 ORTHO05D000561 4.3e-06 55.5 76 51.3
CiPaw.05G147300 Carya illinoinensis HOM05D000380 ORTHO05D000561 4.3e-06 55.5 54 61.1
Dinv31020 Davidia involucrata HOM05D000380 ORTHO05D000561 4.3e-06 55.5 61 55.7
Dinv31082 Davidia involucrata HOM05D000380 ORTHO05D000561 4.3e-06 55.5 61 55.7
FvH4_4g34800 Fragaria vesca HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 58.2
FAN12G1194 Fragaria x ananassa HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 58.2
FAN17G0313 Fragaria x ananassa HOM05D000380 ORTHO05D000561 4.3e-06 55.5 55 58.2
Peaxi162Scf00421g00116 Petunia axillaris HOM05D000380 ORTHO05D000561 4.3e-06 55.5 50 64.0
Cpa.g.sc2573.2 Carica papaya HOM05D000380 ORTHO05D016194 5.6e-06 55.1 58 55.2
Cc11_g14470 Coffea canephora HOM05D000380 ORTHO05D000561 5.6e-06 55.1 57 56.1
Lj2g0015842 Lotus japonicus HOM05D000380 ORTHO05D000561 5.6e-06 55.1 73 50.7
Manes.01G198900 Manihot esculenta HOM05D000380 ORTHO05D000561 5.6e-06 55.1 56 58.9
Sp2g04510 Schrenkiella parvula HOM05D000380 ORTHO05D000561 5.6e-06 55.1 58 56.9
THA.LOC104819496 Tarenaya hassleriana HOM05D000380 ORTHO05D000561 5.6e-06 55.1 79 49.4
C05p51340 Brassica napus HOM05D000380 ORTHO05D000561 7.4e-06 54.7 56 57.1
Rhsim12G0121900 Rhododendron simsii HOM05D000380 ORTHO05D000561 7.4e-06 54.7 57 54.4
Sopen05g001750 Solanum pennellii HOM05D000380 ORTHO05D000561 7.4e-06 54.7 53 60.4
Cfa009110 Carpinus fangiana HOM05D000380 ORTHO05D000561 9.6e-06 54.3 57 56.1
MELO3C017104.2 Cucumis melo HOM05D000380 ORTHO05D000561 9.6e-06 54.3 50 62.0
Nn3g16924 Nelumbo nucifera HOM05D000380 ORTHO05D000561 9.6e-06 54.3 61 55.7
Nitab4.5_0000925g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 9.6e-06 54.3 56 58.9
Solyc05g005750.3 Solanum lycopersicum HOM05D000380 ORTHO05D000561 9.6e-06 54.3 53 60.4


User provided reference genes

Program Settings