Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 3.7e-92 341.7 190 100.0
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 3.7e-92 341.7 190 100.0
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 3.5e-90 335.1 191 99.0
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 1.0e-89 333.6 191 98.4
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 1.0e-89 333.6 191 98.4
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 1.2e-79 300.1 191 84.3
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 1.2e-77 293.5 191 87.4
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 4.6e-74 281.6 192 81.8
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 7.8e-74 280.8 189 81.5
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 1.0e-73 280.4 187 80.2
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 1.3e-73 280.0 192 80.2
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 2.8e-71 272.3 192 83.3
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.4e-46 189.5 130 83.8
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 4.5e-45 185.3 165 60.0
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 6.9e-38 161.4 187 49.2
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.3e-36 157.1 190 48.4
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 1.7e-36 156.8 191 49.7
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 2.2e-36 156.4 191 48.7
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 6.5e-36 154.8 187 48.1
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 1.1e-35 154.1 192 47.4
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 3.2e-35 152.5 190 47.4
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 4.2e-35 152.1 177 47.5
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 4.2e-35 152.1 188 45.7
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 7.1e-35 151.4 198 43.9
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 1.6e-34 150.2 196 44.9
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 2.1e-34 149.8 194 44.8
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 2.7e-34 149.4 192 45.8
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 3.5e-34 149.1 192 46.4
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 4.6e-34 148.7 178 48.3
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 4.6e-34 148.7 181 49.2
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 6.0e-34 148.3 190 45.3
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 6.0e-34 148.3 191 47.1
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.0e-33 147.5 188 46.3
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 2.3e-33 146.4 192 45.8
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 3.0e-33 146.0 191 45.5
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 3.9e-33 145.6 190 44.7
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 5.1e-33 145.2 191 46.6
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 5.1e-33 145.2 191 46.6
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 5.1e-33 145.2 195 43.6
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.7e-33 144.8 188 44.1
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.5e-32 143.7 190 42.6
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.9e-32 143.3 192 48.4
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 4.3e-32 142.1 193 44.6
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 9.6e-32 141.0 188 45.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 9.6e-32 141.0 186 45.2
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.6e-31 140.2 185 45.4
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 1.6e-31 140.2 190 43.2
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 2.1e-31 139.8 193 42.0
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 2.1e-31 139.8 188 47.9
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 2.1e-31 139.8 193 44.6
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 2.8e-31 139.4 177 48.0
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 3.7e-31 139.0 198 46.5
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 4.8e-31 138.7 202 42.1
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 8.2e-31 137.9 190 44.7
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 3.1e-30 136.0 186 41.4
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 3.1e-30 136.0 186 46.8
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 3.1e-30 136.0 186 46.8
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 4.1e-30 135.6 198 41.4
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 4.1e-30 135.6 193 42.5
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 6.9e-30 134.8 187 43.9
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 2.0e-29 133.3 139 46.8
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 4.5e-29 132.1 163 45.4
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 4.5e-29 132.1 193 44.0
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 7.6e-29 131.3 192 43.2
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 2.2e-28 129.8 194 42.8
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 2.9e-28 129.4 189 40.7
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 5.0e-28 128.6 193 43.0
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 6.5e-28 128.3 188 43.6
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 6.5e-28 128.3 185 38.4
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.5e-27 126.3 135 50.4
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 2.7e-26 122.9 185 42.2
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 2.7e-26 122.9 116 54.3
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 3.5e-26 122.5 188 39.4
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 4.6e-26 122.1 187 41.7
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 1.3e-25 120.6 168 41.1
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.8e-25 120.2 186 38.7
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 5.1e-25 118.6 107 50.5
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.3e-23 114.0 187 39.0
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.2e-23 113.2 185 38.9
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.1e-22 110.9 188 38.3
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 3.1e-22 109.4 209 37.3
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 3.9e-17 92.4 198 35.9
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 4.1e-14 82.4 196 34.7
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 3.0e-09 66.2 177 32.8
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 1.3e-07 60.8 87 36.8
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.2e-07 60.1 63 47.6
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 8.2e-07 58.2 108 32.4
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.1e-06 57.8 80 40.0
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.1e-06 57.8 80 40.0
Psat7g248720 Pisum sativum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 83 37.3
Rhsim09G0158300 Rhododendron simsii HOM05D000970 ORTHO05D000788 4.1e-06 55.8 99 32.3
Eucgr.L02112 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.3e-06 55.5 101 37.6
Eucgr.A02219 Eucalyptus grandis HOM05D000180 ORTHO05D000099 7.0e-06 55.1 101 37.6
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 9.1e-06 54.7 85 34.1


User provided reference genes

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