Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p42500 Brassica napus HOM05D002103 ORTHO05D007890 2.4e-97 359.0 200 100.0
CARHR261220 Cardamine hirsuta HOM05D002103 ORTHO05D007890 9.2e-25 117.9 80 76.2
AL6G43940 Arabidopsis lyrata HOM05D002103 ORTHO05D007890 1.2e-24 117.5 88 70.5
BcaC04g21020 Brassica carinata HOM05D002103 ORTHO05D007890 2.7e-24 116.3 89 70.8
C09p36600 Brassica napus HOM05D002103 ORTHO05D007890 2.7e-24 116.3 89 70.8
BolC9t56492H Brassica oleracea HOM05D002103 ORTHO05D007890 2.7e-24 116.3 89 70.8
Sp6g07290 Schrenkiella parvula HOM05D002103 ORTHO05D007890 2.7e-24 116.3 67 83.6
SpUn0121_0020 Schrenkiella parvula HOM05D002103 ORTHO05D007890 2.7e-24 116.3 67 83.6
AT4G10130 Arabidopsis thaliana HOM05D002103 ORTHO05D007890 3.5e-24 115.9 69 82.6
BcaB05g23918 Brassica carinata HOM05D002103 ORTHO05D007890 3.5e-24 115.9 68 85.3
A09p28810 Brassica napus HOM05D002103 ORTHO05D007890 3.5e-24 115.9 69 85.5
BraA09t38443Z Brassica rapa HOM05D002103 ORTHO05D007890 3.5e-24 115.9 69 85.5
Aa31LG9G11870 Aethionema arabicum HOM05D002103 ORTHO05D007890 6.0e-24 115.2 71 77.5
Thhalv10029407m.g Eutrema salsugineum HOM05D002103 ORTHO05D007890 6.0e-24 115.2 67 82.1
Carub.0006s2870 Capsella rubella HOM05D002103 ORTHO05D007890 3.9e-23 112.5 69 82.6
BcaB01g01453 Brassica carinata HOM05D002103 ORTHO05D007890 1.5e-22 110.5 88 69.3
C04p43500 Brassica napus HOM05D002103 ORTHO05D098613 1.9e-17 93.6 60 81.7
THA.LOC104802577 Tarenaya hassleriana HOM05D002103 ORTHO05D007890 4.6e-16 89.0 69 66.7
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 6.6e-15 85.1 97 45.4
COL.COLO4_26477 Corchorus olitorius HOM05D002103 ORTHO05D007890 2.5e-14 83.2 66 54.5
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 5.6e-14 82.0 73 56.2
Haze_18960 Corylus avellana HOM05D002103 ORTHO05D007890 5.6e-14 82.0 73 56.2
CiPaw.16G045900 Carya illinoinensis HOM05D002103 ORTHO05D007890 7.3e-14 81.6 73 57.5
FAN20G2285 Fragaria x ananassa HOM05D002103 ORTHO05D007890 9.5e-14 81.3 67 56.7
Thecc.08G011000 Theobroma cacao HOM05D002103 ORTHO05D007890 9.5e-14 81.3 66 56.1
RcHm_v2.0_Chr6g0307451 Rosa chinensis HOM05D002103 ORTHO05D007890 1.2e-13 80.9 66 57.6
RcHm_v2.0_Chr7g0208301 Rosa chinensis HOM05D002103 ORTHO05D007890 1.2e-13 80.9 66 57.6
TAR381G1315 Trochodendron aralioides HOM05D002103 ORTHO05D007890 1.2e-13 80.9 73 52.1
FvH4_2g34630 Fragaria vesca HOM05D002103 ORTHO05D007890 1.6e-13 80.5 66 57.6
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 2.1e-13 80.1 73 54.8
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 2.1e-13 80.1 73 54.8
FAN27G2960 Fragaria x ananassa HOM05D002103 ORTHO05D007890 2.8e-13 79.7 66 56.1
QL02p005396 Quercus lobata HOM05D002103 ORTHO05D007890 3.6e-13 79.3 73 52.1
Duzib093G0968 Durio zibethinus HOM05D002103 ORTHO05D007890 1.1e-12 77.8 67 50.7
Glyma.11G102400 Glycine max HOM05D002103 ORTHO05D007890 1.1e-12 77.8 71 53.5
Gohir.A03G078312 Gossypium hirsutum HOM05D002103 ORTHO05D007890 1.1e-12 77.8 74 50.0
Atru.chr13.649 Acer truncatum HOM05D002103 ORTHO05D007890 1.4e-12 77.4 73 52.1
MD15G1084800 Malus domestica HOM05D002103 ORTHO05D007890 1.4e-12 77.4 66 53.0
Nn5g30226 Nelumbo nucifera HOM05D002103 ORTHO05D007890 1.4e-12 77.4 73 53.4
Prupe.1G438600 Prunus persica HOM05D002103 ORTHO05D007890 1.4e-12 77.4 66 53.0
SGA_v2.0_scaffold62G21581 Striga asiatica HOM05D002103 ORTHO05D007890 1.4e-12 77.4 74 51.4
TAR628G0377 Trochodendron aralioides HOM05D000369 ORTHO05D007890 1.4e-12 77.4 73 50.7
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 2.4e-12 76.6 64 57.8
Cpa.g.c24415.2 Carica papaya HOM05D002103 ORTHO05D007890 3.1e-12 76.3 73 49.3
Gohir.D02G092000 Gossypium hirsutum HOM05D002103 ORTHO05D007890 4.0e-12 75.9 74 48.6
Sc19g0008280 Simmondsia chinensis HOM05D002103 ORTHO05D007890 4.0e-12 75.9 90 46.7
TWI56G0989 Tripterygium wilfordii HOM05D002103 ORTHO05D007890 4.0e-12 75.9 82 47.6
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 5.2e-12 75.5 92 42.4
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 5.2e-12 75.5 73 46.6
Dinv39329 Davidia involucrata HOM05D002103 ORTHO05D007890 5.2e-12 75.5 73 46.6
Lalb_Chr23g0267731 Lupinus albus HOM05D002103 ORTHO05D007890 5.2e-12 75.5 71 52.1
CSS0015524 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 6.8e-12 75.1 73 49.3
arahy.Tifrunner.gnm1.ann1.7RGS7A Arachis hypogaea HOM05D002103 ORTHO05D007890 8.9e-12 74.7 71 53.5
EL10Ac3g05247 Beta vulgaris HOM05D002103 ORTHO05D007890 8.9e-12 74.7 73 46.6
Eucgr.F00241 Eucalyptus grandis HOM05D002103 ORTHO05D007890 8.9e-12 74.7 73 50.7
Gorai.005G103400 Gossypium raimondii HOM05D002103 ORTHO05D007890 8.9e-12 74.7 74 48.6
arahy.Tifrunner.gnm1.ann1.MW41KC Arachis hypogaea HOM05D002103 ORTHO05D007890 1.2e-11 74.3 71 54.9
Migut.N02701 Erythranthe guttata HOM05D002103 ORTHO05D007890 1.2e-11 74.3 69 47.8
Psat5g230280 Pisum sativum HOM05D002103 ORTHO05D007890 2.0e-11 73.6 71 50.7
PGR083G1082 Punica granatum HOM05D002103 ORTHO05D007890 2.0e-11 73.6 91 42.9
Aqoxy1G02088 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 2.6e-11 73.2 73 43.8
Aqoxy1G04301 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 2.6e-11 73.2 73 43.8
FAN15G1587 Fragaria x ananassa HOM05D002103 ORTHO05D007890 2.6e-11 73.2 66 53.0
MSTRG.22267 Avicennia marina HOM05D002103 ORTHO05D007890 3.4e-11 72.8 73 46.6
Lsat_1_v5_gn_1_20241 Lactuca sativa HOM05D002103 ORTHO05D007890 3.4e-11 72.8 71 50.7
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 3.4e-11 72.8 90 43.3
SGA_v2.0_scaffold208G41999 Striga asiatica HOM05D002103 ORTHO05D007890 3.4e-11 72.8 68 52.9
Hma1.2p1_0982F.1_g243870 Hydrangea macrophylla HOM05D002103 ORTHO05D007890 4.4e-11 72.4 73 43.8
CSS0029487 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 5.8e-11 72.0 73 47.9
CANSAT11G1050 Cannabis sativa HOM05D002103 ORTHO05D007890 5.8e-11 72.0 70 54.3
Medtr3g006810 Medicago truncatula HOM05D002103 ORTHO05D007890 5.8e-11 72.0 71 46.5
SGA_v2.0_scaffold168G38534 Striga asiatica HOM05D002103 ORTHO05D007890 5.8e-11 72.0 78 47.4
Aqoxy7G04203 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 7.6e-11 71.6 73 42.5
Ciclev10003422m.g Citrus clementina HOM05D002103 ORTHO05D007890 7.6e-11 71.6 73 46.6
Medtr4g074580 Medicago truncatula HOM05D002103 ORTHO05D007890 7.6e-11 71.6 80 42.5
VMungo1127G1488 Vigna mungo HOM05D002103 ORTHO05D007890 7.6e-11 71.6 71 50.7
Medtr6g003930 Medicago truncatula HOM05D002103 ORTHO05D007890 9.9e-11 71.2 71 46.5
Ca_14028_v3 Cicer arietinum L. HOM05D002103 ORTHO05D007890 1.3e-10 70.9 80 46.2
ECA247G1332 Erigeron canadensis HOM05D002103 ORTHO05D007890 1.3e-10 70.9 80 46.2
Oeu011541.1 Olea europaea HOM05D002103 ORTHO05D007890 1.3e-10 70.9 72 44.4
TPR.G32346 Trifolium pratense HOM05D002103 ORTHO05D007890 1.3e-10 70.9 80 42.5
HanXRQChr12g0375061 Helianthus annuus HOM05D002103 ORTHO05D007890 2.9e-10 69.7 75 48.0
PSO210G1636 Papaver somniferum HOM05D002103 ORTHO05D007890 2.9e-10 69.7 73 45.2
Phvul.011G031400 Phaseolus vulgaris HOM05D002103 ORTHO05D007890 3.8e-10 69.3 71 47.9
Potri.014G032000 Populus trichocarpa HOM05D002103 ORTHO05D007890 3.8e-10 69.3 73 45.2
Sabra14G0022500 Salix brachista HOM05D002103 ORTHO05D007890 3.8e-10 69.3 73 43.8
MD08G1103500 Malus domestica HOM05D002103 ORTHO05D007890 4.9e-10 68.9 66 48.5
HanXRQChr02g0037671 Helianthus annuus HOM05D002103 ORTHO05D007890 8.4e-10 68.2 75 46.7
Cc10_g04330 Coffea canephora HOM05D002103 ORTHO05D007890 1.1e-09 67.8 73 42.5
Lj4C53T13 Lonicera japonica HOM05D002103 ORTHO05D007890 1.1e-09 67.8 71 46.5
Manes.03G089400 Manihot esculenta HOM05D002103 ORTHO05D007890 1.1e-09 67.8 76 47.4
ATR0605G347 Amborella trichopoda HOM05D002103 ORTHO05D007890 1.4e-09 67.4 70 50.0
Lj3P736T14 Lonicera japonica HOM05D002103 ORTHO05D007890 1.4e-09 67.4 71 47.9
Lj1g0021003 Lotus japonicus HOM05D002103 ORTHO05D007890 1.4e-09 67.4 67 50.7
Lj3g0001779 Lotus japonicus HOM05D002103 ORTHO05D007890 1.4e-09 67.4 66 56.1
PSO801G0348 Papaver somniferum HOM05D002103 ORTHO05D007890 1.4e-09 67.4 73 43.8
PSO170G0070 Papaver somniferum HOM05D002103 ORTHO05D007890 1.9e-09 67.0 73 43.8
unitig_19.g30010 Utricularia gibba HOM05D002103 ORTHO05D007890 1.9e-09 67.0 70 44.3
unitig_8.g5018 Utricularia gibba HOM05D002103 ORTHO05D007890 1.9e-09 67.0 70 44.3
Sed0021207 Sechium edule HOM05D002103 ORTHO05D007890 4.1e-09 65.9 73 42.5
PSO339G5974 Papaver somniferum HOM05D002103 ORTHO05D007890 5.4e-09 65.5 73 43.8
Oeu011560.1 Olea europaea HOM05D002103 ORTHO05D007890 7.1e-09 65.1 72 41.7
ClCG08G015720 Citrullus lanatus HOM05D002103 ORTHO05D007890 9.2e-09 64.7 73 41.1
SHI08293 Sapria himalayana HOM05D002103 ORTHO05D007890 9.2e-09 64.7 67 43.3
HPP92_016731 Vanilla planifolia HOM05D002103 ORTHO05D007890 1.2e-08 64.3 82 41.5
CsaV3_2G028050 Cucumis sativus L. HOM05D002103 ORTHO05D007890 1.6e-08 63.9 73 41.1
MELO3C010884.2 Cucumis melo HOM05D002103 ORTHO05D007890 2.7e-08 63.2 73 39.7
Duzib116G0248 Durio zibethinus HOM05D002103 ORTHO05D007890 2.7e-08 63.2 56 50.0
CAN.G1422.7 Capsicum annuum HOM05D002103 ORTHO05D007890 4.6e-08 62.4 73 39.7
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.3e-07 60.1 73 39.7
Os09g0460000 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 2.3e-07 60.1 81 40.7
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 5.1e-07 58.9 73 39.7
Nitab4.5_0004376g0080 Nicotiana tabacum HOM05D002103 ORTHO05D007890 6.6e-07 58.5 71 40.8
Os08g0474600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 1.5e-06 57.4 63 47.6
PGSC0003DMG400015418 Solanum tuberosum HOM05D002103 ORTHO05D007890 1.5e-06 57.4 72 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4853 Anthoceros agrestis HOM05D002103 ORTHO05D007890 1.9e-06 57.0 66 48.5
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.9e-06 57.0 72 37.5
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 5.6e-06 55.5 72 36.1
Sopen12g030780 Solanum pennellii HOM05D002103 ORTHO05D007890 5.6e-06 55.5 72 36.1
Zm00001eb315040 Zea mays HOM05D002103 ORTHO05D007890 5.6e-06 55.5 64 43.8
Pp3c18_17490 Physcomitrium patens HOM05D002103 ORTHO05D007890 7.3e-06 55.1 97 30.9


User provided reference genes

Program Settings